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| #!/bin/bash | ||
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| perl ~/PhageProteomicTree/genbank_code/genbank2table.pl -t -p proteins.faa -i genome_names.txt genomes/* | ||
| perl ~/PhageProteomicTree/protein_genome_length.pl proteins.faa > protein_genome_length.txt | ||
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| cut -f 3 -t$'\t' genome_names.txt | sort | uniq -c | sort -n | ||
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| makeblastdb -in proteins.faa -dbtype prot | ||
| perl ~/PhageProteomicTree/split_blast_queries_edwards_blastplus.pl -f proteins.faa -n 100 -p blastp -db proteins.faa -d phage_proteins_blast -e 0.1 | ||
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| #!/bin/bash | ||
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| # when this is done concatenate everything | ||
| cat phage_proteins_blast/*blastp > phage_proteins.blastp | ||
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| mkdir fastafiles | ||
| java -jar ~/PhageProteomicTree/ppt.jar phage_proteins.blastp 0.1 proteins.faa fastafiles | ||
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| perl ~/PhageProteomicTree/make_id_maps.pl id.map protein_genome_length.txt genome_names.txt | ||
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| export NUMFILES=$(ls fastafiles/ | sed -e 's/fasta.//' | sort -nr | head -n 1); echo "There are $NUMFILES files to process" | ||
| for DIR in sge_output aligned dnd protdist; do if [ ! -e $DIR ]; then mkdir $DIR; fi; done | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,93 +1,93 @@ | ||
| 84 Bac. AvesoBmorei | ||
| 39 Bac. B4i | ||
| 7 Bac. B5Si | ||
| 36 Bac. Bastillei | ||
| 60 Bac. Bcp1i | ||
| 38 Bac. BCP78i | ||
| 80 Bac. BCP8-2i | ||
| 8 Bac. BCU4i | ||
| 53 Bac. BigBerthai | ||
| 72 Bac. Bobbi | ||
| 92 Bac. Bp8p-Ci | ||
| 17 Bac. Bp8p-Ti | ||
| 58 Bac. BPS10Ci | ||
| 37 Bac. BPS13i | ||
| 65 Bac. CAM003i | ||
| 51 Bac. CampHawki | ||
| 45 Bac. cereus vB_BceM_Bc431v3i | ||
| 75 Bac. CP-51i | ||
| 62 Bac. Evolii | ||
| 86 Bac. Eyukii | ||
| 54 Bac. Grassi | ||
| 64 Bac. Hakunai | ||
| 61 Bac. Hoody Ti | ||
| 79 Bac. JBP901i | ||
| 88 Bac. JLi | ||
| 81 Bac. Materi | ||
| 63 Bac. Megatroni | ||
| 82 Bac. Moonbeami | ||
| 43 Bac. phiAGATEi | ||
| 48 Bac. phiNIT1 DNAi | ||
| 71 Bac. Rileyi | ||
| 89 Bac. Shanettei | ||
| 84 Bac. AvesoBmore | ||
| 39 Bac. B4 | ||
| 7 Bac. B5S | ||
| 36 Bac. Bastille | ||
| 60 Bac. Bcp1 | ||
| 38 Bac. BCP78 | ||
| 80 Bac. BCP8-2 | ||
| 8 Bac. BCU4 | ||
| 53 Bac. BigBertha | ||
| 72 Bac. Bobb | ||
| 92 Bac. Bp8p-C | ||
| 17 Bac. Bp8p-T | ||
| 58 Bac. BPS10C | ||
| 37 Bac. BPS13 | ||
| 65 Bac. CAM003 | ||
| 51 Bac. CampHawk | ||
| 45 Bac. cereus vB_BceM_Bc431v3 | ||
| 75 Bac. CP-51 | ||
| 62 Bac. Evoli | ||
| 86 Bac. Eyuki | ||
| 54 Bac. Grass | ||
| 64 Bac. Hakuna | ||
| 61 Bac. Hoody T | ||
| 79 Bac. JBP901 | ||
| 88 Bac. JL | ||
| 81 Bac. Mater | ||
| 63 Bac. Megatron | ||
| 82 Bac. Moonbeam | ||
| 43 Bac. phiAGATE | ||
| 48 Bac. phiNIT1 | ||
| 71 Bac. Riley | ||
| 89 Bac. Shanette | ||
| 15 Bac. SIOphi partial genome | ||
| 93 Bac. SPG24 | ||
| 32 Bac. SPO1i | ||
| 52 Bac. Spocki | ||
| 49 Bac. Trolli | ||
| 85 Bac. TsarBombai | ||
| 35 Bac. W Ph i | ||
| 34 Bro. A9i | ||
| 78 Ent. ECP3i | ||
| 90 Ent. EFDG1i | ||
| 91 Ent. EFLK1i | ||
| 1 Ent. phiEF24C-P2 DNAi | ||
| 31 Ent. phiEF24Ci | ||
| 33 Lac. Lb338-1i | ||
| 27 Lac. LP65i | ||
| 30 Lis. A511i | ||
| 68 Lis. List-36i | ||
| 67 Lis. LMSP-25i | ||
| 70 Lis. LMTA-148i | ||
| 20 Lis. LMTA-34i | ||
| 22 Lis. LMTA-57i | ||
| 21 Lis. LMTA-94i | ||
| 66 Lis. LP-048i | ||
| 18 Lis. LP-064i | ||
| 69 Lis. LP-083-2i | ||
| 19 Lis. LP-124i | ||
| 47 Lis. LP-125i | ||
| 4 Lis. P100i | ||
| 44 Lis. vB_LmoM_AG20i | ||
| 77 Lis. WIL-1i | ||
| 2 Sta. 676Zi | ||
| 10 Sta. A3Ri | ||
| 5 Sta. A5Wi | ||
| 11 Sta. Fi200Wi | ||
| 29 Sta. G1i | ||
| 40 Sta. GH15i | ||
| 25 Sta. IME-SA118i | ||
| 26 Sta. IME-SA119i | ||
| 23 Sta. IME-SA1i | ||
| 24 Sta. IME-SA2i | ||
| 6 Sta. ISPi | ||
| 42 Sta. JD007i | ||
| 3 Sta. Ki | ||
| 73 Sta. MCE-2014i | ||
| 12 Sta. MSA6i | ||
| 76 Sta. P108i | ||
| 13 Sta. P4Wi | ||
| 16 Sta. phiIBB-SEP1i | ||
| 87 Sta. phiIPLA-C1Ci | ||
| 83 Sta. phiIPLA-RODIi | ||
| 59 Sta. phiSA012 DNAi | ||
| 56 Sta. S25-3 DNAi | ||
| 55 Sta. S25-4 DNAi | ||
| 41 Sta. SA11i | ||
| 14 Sta. SA5i | ||
| 57 Sta. Sb-1i | ||
| 9 Sta. Staph1Ni | ||
| 74 Sta. Team1i | ||
| 28 Sta. Tworti | ||
| 50 Sta. vB_SauM_Remusi | ||
| 46 Sta. vB_SauM_Romulusi | ||
| 32 Bac. SPO1 | ||
| 52 Bac. Spock | ||
| 49 Bac. Troll | ||
| 85 Bac. TsarBomba | ||
| 35 Bac. W Ph | ||
| 34 Bro. A9 | ||
| 78 Ent. ECP3 | ||
| 90 Ent. EFDG1 | ||
| 91 Ent. EFLK1 | ||
| 31 Ent. phiEF24C | ||
| 1 Ent. phiEF24C-P2 | ||
| 33 Lac. Lb338-1 | ||
| 27 Lac. LP65 | ||
| 30 Lis. A511 | ||
| 68 Lis. List-36 | ||
| 67 Lis. LMSP-25 | ||
| 70 Lis. LMTA-148 | ||
| 20 Lis. LMTA-34 | ||
| 22 Lis. LMTA-57 | ||
| 21 Lis. LMTA-94 | ||
| 66 Lis. LP-048 | ||
| 18 Lis. LP-064 | ||
| 69 Lis. LP-083-2 | ||
| 19 Lis. LP-124 | ||
| 47 Lis. LP-125 | ||
| 4 Lis. P100 | ||
| 44 Lis. vB_LmoM_AG20 | ||
| 77 Lis. WIL-1 | ||
| 2 Sta. 676Z | ||
| 10 Sta. A3R | ||
| 5 Sta. A5W | ||
| 11 Sta. Fi200W | ||
| 29 Sta. G1 | ||
| 40 Sta. GH15 | ||
| 23 Sta. IME-SA1 | ||
| 25 Sta. IME-SA118 | ||
| 26 Sta. IME-SA119 | ||
| 24 Sta. IME-SA2 | ||
| 6 Sta. ISP | ||
| 42 Sta. JD007 | ||
| 3 Sta. K | ||
| 73 Sta. MCE-2014 | ||
| 12 Sta. MSA6 | ||
| 76 Sta. P108 | ||
| 13 Sta. P4W | ||
| 16 Sta. phiIBB-SEP1 | ||
| 87 Sta. phiIPLA-C1C | ||
| 83 Sta. phiIPLA-RODI | ||
| 59 Sta. phiSA012 | ||
| 56 Sta. S25-3 | ||
| 55 Sta. S25-4 | ||
| 41 Sta. SA11 | ||
| 14 Sta. SA5 | ||
| 57 Sta. Sb-1 | ||
| 9 Sta. Staph1N | ||
| 74 Sta. Team1 | ||
| 28 Sta. Twort | ||
| 50 Sta. vB_SauM_Remus | ||
| 46 Sta. vB_SauM_Romulus |
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| JX080301 Staphylococcus phage A3R, complete genome. Sta. A3Ri A3R | ||
| NC_009811 Listeria phage A511, complete genome. Lis. A511i A511 | ||
| EU418428 Staphylococcus phage A5W, complete genome. Sta. A5Wi A5W | ||
| NC_015253 Brochothrix phage A9, complete genome. Bro. A9i A9 | ||
| NC_020871 Listeria phage vB_LmoM_AG20, complete genome. Lis. vB_LmoM_AG20i AG20 | ||
| NC_028887 Bacillus phage AvesoBmore, complete genome. Bac. AvesoBmorei AvesoBmore | ||
| NC_018863 Bacillus phage B4, complete genome. Bac. B4i B4 | ||
| JN797796 Bacillus phage B5S, complete genome. Bac. B5Si B5S | ||
| NC_018860 Bacillus phage BCP78, complete genome. Bac. BCP78i BCP78 | ||
| NC_027355 Bacillus phage BCP8-2, complete genome. Bac. BCP8-2i BCP8-2 | ||
| JN797798 Bacillus phage BCU4, complete genome. Bac. BCU4i BCU4 | ||
| NC_023501 Bacillus phage BPS10C, complete genome. Bac. BPS10Ci BPS10C | ||
| NC_018857 Bacillus phage BPS13, complete genome. Bac. BPS13i BPS13 | ||
| NC_018856 Bacillus phage Bastille, complete genome. Bac. Bastillei Bastille | ||
| NC_020873 Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome. Bac. cereus vB_BceM_Bc431v3i Bc431v3 | ||
| NC_024137 Bacillus phage Bcp1, complete genome. Bac. Bcp1i Bcp1 | ||
| NC_022769 Bacillus phage BigBertha, complete genome. Bac. BigBerthai BigBertha | ||
| NC_024792 Bacillus phage Bobb, complete genome. Bac. Bobbi Bobb | ||
| NC_029121 Bacillus phage Bp8p-C, complete genome. Bac. Bp8p-Ci Bp8p-C | ||
| KJ010548 Bacillus phage Bp8p-T, complete genome. Bac. Bp8p-Ti Bp8p-T | ||
| NC_024216 Bacillus phage CAM003, complete genome. Bac. CAM003i CAM003 | ||
| NC_025423 Bacillus phage CP-51, complete genome. Bac. CP-51i CP-51 | ||
| NC_022761 Bacillus phage CampHawk, complete genome. Bac. CampHawki CampHawk | ||
| NC_027335 Enterococcus phage ECP3, complete genome. Ent. ECP3i ECP3 | ||
| NC_029009 Enterococcus phage EFDG1, complete genome. Ent. EFDG1i EFDG1 | ||
| NC_029026 Enterococcus phage EFLK1, complete genome. Ent. EFLK1i EFLK1 | ||
| NC_024207 Bacillus phage Evoli, complete genome. Bac. Evolii Evoli | ||
| NC_028944 Bacillus phage Eyuki, complete genome. Bac. Eyukii Eyuki | ||
| JX080303 Staphylococcus phage Fi200W, complete genome. Sta. Fi200Wi Fi200W | ||
| NC_007066 Staphylococcus phage G1, complete genome. Sta. G1i G1 | ||
| NC_019448 Staphylococcus phage GH15, complete genome. Sta. GH15i GH15 | ||
| NC_022771 Bacillus phage Grass, complete genome. Bac. Grassi Grass | ||
| NC_024213 Bacillus phage Hakuna, complete genome. Bac. Hakunai Hakuna | ||
| NC_024205 Bacillus phage Hoody T, complete genome. Bac. Hoody Ti Hoody_T | ||
| KP687431 Staphylococcus phage IME-SA1, complete genome. Sta. IME-SA1i IME-SA1 | ||
| KR902361 Staphylococcus phage IME-SA118, complete genome. Sta. IME-SA118i IME-SA118 | ||
| KR908644 Staphylococcus phage IME-SA119, complete genome. Sta. IME-SA119i IME-SA119 | ||
| KP687432 Staphylococcus phage IME-SA2, complete genome. Sta. IME-SA2i IME-SA2 | ||
| FR852584 Staphylococcus phage ISP complete genome. Sta. ISPi ISP | ||
| NC_027352 Bacillus phage JBP901, complete genome. Bac. JBP901i JBP901 | ||
| NC_019726 Staphylococcus phage JD007, complete genome. Sta. JD007i JD007 | ||
| NC_028982 Bacillus phage JL, complete genome. Bac. JLi JL | ||
| JX080302 Staphylococcus phage 676Z, complete genome. Sta. 676Zi JX080302.2 | ||
| NC_024360 Listeria phage LMSP-25, complete genome. Lis. LMSP-25i LMSP-25 | ||
| NC_024787 Listeria phage LMTA-148, complete genome. Lis. LMTA-148i LMTA-148 | ||
| KJ586794 Listeria phage LMTA-34, complete genome. Lis. LMTA-34i LMTA-34 | ||
| KJ591605 Listeria phage LMTA-57, complete genome. Lis. LMTA-57i LMTA-57 | ||
| KJ586795 Listeria phage LMTA-94, complete genome. Lis. LMTA-94i LMTA-94 | ||
| NC_024359 Listeria phage LP-048, complete genome. Lis. LP-048i LP-048 | ||
| KJ094029 Listeria phage LP-064, complete genome. Lis. LP-064i LP-064 | ||
| NC_024383 Listeria phage LP-083-2, complete genome. Lis. LP-083-2i LP-083-2 | ||
| KJ094031 Listeria phage LP-124, complete genome. Lis. LP-124i LP-124 | ||
| NC_021781 Listeria phage LP-125, complete genome. Lis. LP-125i LP-125 | ||
| NC_006565 Lactobacillus phage LP65, complete genome. Lac. LP65i LP65 | ||
| NC_012530 Lactobacillus phage Lb338-1, complete genome. Lac. Lb338-1i Lb338-1 | ||
| NC_024364 Listeria phage List-36, complete genome. Lis. List-36i List-36 | ||
| NC_025416 Staphylococcus phage MCE-2014, complete genome. Sta. MCE-2014i MCE-2014 | ||
| JX080304 Staphylococcus phage MSA6, complete genome. Sta. MSA6i MSA6 | ||
| NC_027366 Bacillus phage Mater, complete genome. Bac. Materi Mater | ||
| NC_024211 Bacillus phage Megatron, complete genome. Bac. Megatroni Megatron | ||
| NC_027374 Bacillus phage Moonbeam, complete genome. Bac. Moonbeami Moonbeam | ||
| NC_005880 Staphylococcus phage K, complete genome. Sta. Ki NC_005880.2 | ||
| DQ004855 Listeria bacteriophage P100, complete genome. Lis. P100i P100 | ||
| NC_025426 Staphylococcus phage P108, complete genome. Sta. P108i P108 | ||
| JX080305 Staphylococcus phage P4W, complete genome. Sta. P4Wi P4W | ||
| NC_022090 Staphylococcus phage vB_SauM_Remus, complete genome. Sta. vB_SauM_Remusi Remus | ||
| NC_024788 Bacillus phage Riley, complete genome. Bac. Rileyi Riley | ||
| NC_020877 Staphylococcus phage vB_SauM_Romulus, complete genome. Sta. vB_SauM_Romulusi Romulus | ||
| NC_022920 Staphylococcus phage S25-3 DNA, complete genome. Sta. S25-3 DNAi S25-3 | ||
| NC_022918 Staphylococcus phage S25-4 DNA, complete genome. Sta. S25-4 DNAi S25-4 | ||
| NC_019511 Staphylococcus phage SA11, complete genome. Sta. SA11i SA11 | ||
| JX875065 Staphylococcus phage SA5, complete genome. Sta. SA5i SA5 | ||
| JX080301 Staphylococcus phage A3R, complete genome. Sta. A3R A3R | ||
| NC_009811 Listeria phage A511, complete genome. Lis. A511 A511 | ||
| EU418428 Staphylococcus phage A5W, complete genome. Sta. A5W A5W | ||
| NC_015253 Brochothrix phage A9, complete genome. Bro. A9 A9 | ||
| NC_020871 Listeria phage vB_LmoM_AG20, complete genome. Lis. vB_LmoM_AG20 AG20 | ||
| NC_028887 Bacillus phage AvesoBmore, complete genome. Bac. AvesoBmore AvesoBmore | ||
| NC_018863 Bacillus phage B4, complete genome. Bac. B4 B4 | ||
| JN797796 Bacillus phage B5S, complete genome. Bac. B5S B5S | ||
| NC_018860 Bacillus phage BCP78, complete genome. Bac. BCP78 BCP78 | ||
| NC_027355 Bacillus phage BCP8-2, complete genome. Bac. BCP8-2 BCP8-2 | ||
| JN797798 Bacillus phage BCU4, complete genome. Bac. BCU4 BCU4 | ||
| NC_023501 Bacillus phage BPS10C, complete genome. Bac. BPS10C BPS10C | ||
| NC_018857 Bacillus phage BPS13, complete genome. Bac. BPS13 BPS13 | ||
| NC_018856 Bacillus phage Bastille, complete genome. Bac. Bastille Bastille | ||
| NC_020873 Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome. Bac. cereus vB_BceM_Bc431v3 Bc431v3 | ||
| NC_024137 Bacillus phage Bcp1, complete genome. Bac. Bcp1 Bcp1 | ||
| NC_022769 Bacillus phage BigBertha, complete genome. Bac. BigBertha BigBertha | ||
| NC_024792 Bacillus phage Bobb, complete genome. Bac. Bobb Bobb | ||
| NC_029121 Bacillus phage Bp8p-C, complete genome. Bac. Bp8p-C Bp8p-C | ||
| KJ010548 Bacillus phage Bp8p-T, complete genome. Bac. Bp8p-T Bp8p-T | ||
| NC_024216 Bacillus phage CAM003, complete genome. Bac. CAM003 CAM003 | ||
| NC_025423 Bacillus phage CP-51, complete genome. Bac. CP-51 CP-51 | ||
| NC_022761 Bacillus phage CampHawk, complete genome. Bac. CampHawk CampHawk | ||
| NC_027335 Enterococcus phage ECP3, complete genome. Ent. ECP3 ECP3 | ||
| NC_029009 Enterococcus phage EFDG1, complete genome. Ent. EFDG1 EFDG1 | ||
| NC_029026 Enterococcus phage EFLK1, complete genome. Ent. EFLK1 EFLK1 | ||
| NC_024207 Bacillus phage Evoli, complete genome. Bac. Evoli Evoli | ||
| NC_028944 Bacillus phage Eyuki, complete genome. Bac. Eyuki Eyuki | ||
| JX080303 Staphylococcus phage Fi200W, complete genome. Sta. Fi200W Fi200W | ||
| NC_007066 Staphylococcus phage G1, complete genome. Sta. G1 G1 | ||
| NC_019448 Staphylococcus phage GH15, complete genome. Sta. GH15 GH15 | ||
| NC_022771 Bacillus phage Grass, complete genome. Bac. Grass Grass | ||
| NC_024213 Bacillus phage Hakuna, complete genome. Bac. Hakuna Hakuna | ||
| NC_024205 Bacillus phage Hoody T, complete genome. Bac. Hoody T Hoody_T | ||
| KP687431 Staphylococcus phage IME-SA1, complete genome. Sta. IME-SA1 IME-SA1 | ||
| KR902361 Staphylococcus phage IME-SA118, complete genome. Sta. IME-SA118 IME-SA118 | ||
| KR908644 Staphylococcus phage IME-SA119, complete genome. Sta. IME-SA119 IME-SA119 | ||
| KP687432 Staphylococcus phage IME-SA2, complete genome. Sta. IME-SA2 IME-SA2 | ||
| FR852584 Staphylococcus phage ISP complete genome. Sta. ISP ISP | ||
| NC_027352 Bacillus phage JBP901, complete genome. Bac. JBP901 JBP901 | ||
| NC_019726 Staphylococcus phage JD007, complete genome. Sta. JD007 JD007 | ||
| NC_028982 Bacillus phage JL, complete genome. Bac. JL JL | ||
| JX080302 Staphylococcus phage 676Z, complete genome. Sta. 676Z JX080302.2 | ||
| NC_024360 Listeria phage LMSP-25, complete genome. Lis. LMSP-25 LMSP-25 | ||
| NC_024787 Listeria phage LMTA-148, complete genome. Lis. LMTA-148 LMTA-148 | ||
| KJ586794 Listeria phage LMTA-34, complete genome. Lis. LMTA-34 LMTA-34 | ||
| KJ591605 Listeria phage LMTA-57, complete genome. Lis. LMTA-57 LMTA-57 | ||
| KJ586795 Listeria phage LMTA-94, complete genome. Lis. LMTA-94 LMTA-94 | ||
| NC_024359 Listeria phage LP-048, complete genome. Lis. LP-048 LP-048 | ||
| KJ094029 Listeria phage LP-064, complete genome. Lis. LP-064 LP-064 | ||
| NC_024383 Listeria phage LP-083-2, complete genome. Lis. LP-083-2 LP-083-2 | ||
| KJ094031 Listeria phage LP-124, complete genome. Lis. LP-124 LP-124 | ||
| NC_021781 Listeria phage LP-125, complete genome. Lis. LP-125 LP-125 | ||
| NC_006565 Lactobacillus phage LP65, complete genome. Lac. LP65 LP65 | ||
| NC_012530 Lactobacillus phage Lb338-1, complete genome. Lac. Lb338-1 Lb338-1 | ||
| NC_024364 Listeria phage List-36, complete genome. Lis. List-36 List-36 | ||
| NC_025416 Staphylococcus phage MCE-2014, complete genome. Sta. MCE-2014 MCE-2014 | ||
| JX080304 Staphylococcus phage MSA6, complete genome. Sta. MSA6 MSA6 | ||
| NC_027366 Bacillus phage Mater, complete genome. Bac. Mater Mater | ||
| NC_024211 Bacillus phage Megatron, complete genome. Bac. Megatron Megatron | ||
| NC_027374 Bacillus phage Moonbeam, complete genome. Bac. Moonbeam Moonbeam | ||
| NC_005880 Staphylococcus phage K, complete genome. Sta. K NC_005880.2 | ||
| DQ004855 Listeria bacteriophage P100, complete genome. Lis. P100 P100 | ||
| NC_025426 Staphylococcus phage P108, complete genome. Sta. P108 P108 | ||
| JX080305 Staphylococcus phage P4W, complete genome. Sta. P4W P4W | ||
| NC_022090 Staphylococcus phage vB_SauM_Remus, complete genome. Sta. vB_SauM_Remus Remus | ||
| NC_024788 Bacillus phage Riley, complete genome. Bac. Riley Riley | ||
| NC_020877 Staphylococcus phage vB_SauM_Romulus, complete genome. Sta. vB_SauM_Romulus Romulus | ||
| NC_022920 Staphylococcus phage S25-3 DNA, complete genome. Sta. S25-3 S25-3 | ||
| NC_022918 Staphylococcus phage S25-4 DNA, complete genome. Sta. S25-4 S25-4 | ||
| NC_019511 Staphylococcus phage SA11, complete genome. Sta. SA11 SA11 | ||
| JX875065 Staphylococcus phage SA5, complete genome. Sta. SA5 SA5 | ||
| KC699836 Bacillus phage SIOphi, partial genome. Bac. SIOphi partial genome SIOphi | ||
| NC_030903 Bacillus phage SPG24 DNA, contig00001 sequence. Bac. SPG24 SPG24 | ||
| NC_011421 Bacillus phage SPO1, complete genome. Bac. SPO1i SPO1 | ||
| NC_023009 Staphylococcus phage Sb-1, complete genome. Sta. Sb-1i Sb-1 | ||
| NC_028983 Bacillus phage Shanette, complete genome. Bac. Shanettei Shanette | ||
| NC_022763 Bacillus phage Spock, complete genome. Bac. Spocki Spock | ||
| JX080300 Staphylococcus phage Staph1N, complete genome. Sta. Staph1Ni Staph1 | ||
| NC_025417 Staphylococcus phage Team1, complete genome. Sta. Team1i Team1 | ||
| NC_022088 Bacillus phage Troll, complete genome. Bac. Trolli Troll | ||
| NC_028890 Bacillus phage TsarBomba, complete genome. Bac. TsarBombai TsarBomba | ||
| NC_007021 Staphylococcus phage Twort, complete genome. Sta. Tworti Twort | ||
| NC_025440 Listeria phage WIL-1, complete genome. Lis. WIL-1i WIL1 | ||
| NC_016563 Bacillus phage W.Ph., complete genome. Bac. W Ph i WPh | ||
| NC_020081 Bacillus phage phiAGATE, complete genome. Bac. phiAGATEi phiAGATE | ||
| AB609718 Enterococcus phage phiEF24C-P2 DNA, complete genome. Ent. phiEF24C-P2 DNAi phiEF24C-P2 | ||
| NC_009904 Enterococcus phage phiEF24C, complete genome. Ent. phiEF24Ci phiEF24C | ||
| NC_028962 Staphylococcus phage phiIPLA-C1C, complete genome. Sta. phiIPLA-C1Ci phiIPLA-C1C | ||
| NC_028765 Staphylococcus phage phiIPLA-RODI, complete genome. Sta. phiIPLA-RODIi phiIPLA-RODI | ||
| NC_021856 Bacillus phage phiNIT1 DNA, complete genome. Bac. phiNIT1 DNAi phiNIT1 | ||
| NC_023573 Staphylococcus phage phiSA012 DNA, complete genome. Sta. phiSA012 DNAi phiSA012 | ||
| KF021268 Staphylococcus phage phiIBB-SEP1, complete genome. Sta. phiIBB-SEP1i philBB-SEP1 | ||
| NC_011421 Bacillus phage SPO1, complete genome. Bac. SPO1 SPO1 | ||
| NC_023009 Staphylococcus phage Sb-1, complete genome. Sta. Sb-1 Sb-1 | ||
| NC_028983 Bacillus phage Shanette, complete genome. Bac. Shanette Shanette | ||
| NC_022763 Bacillus phage Spock, complete genome. Bac. Spock Spock | ||
| JX080300 Staphylococcus phage Staph1N, complete genome. Sta. Staph1N Staph1 | ||
| NC_025417 Staphylococcus phage Team1, complete genome. Sta. Team1 Team1 | ||
| NC_022088 Bacillus phage Troll, complete genome. Bac. Troll Troll | ||
| NC_028890 Bacillus phage TsarBomba, complete genome. Bac. TsarBomba TsarBomba | ||
| NC_007021 Staphylococcus phage Twort, complete genome. Sta. Twort Twort | ||
| NC_025440 Listeria phage WIL-1, complete genome. Lis. WIL-1 WIL1 | ||
| NC_016563 Bacillus phage W.Ph., complete genome. Bac. W Ph WPh | ||
| NC_020081 Bacillus phage phiAGATE, complete genome. Bac. phiAGATE phiAGATE | ||
| AB609718 Enterococcus phage phiEF24C-P2 DNA, complete genome. Ent. phiEF24C-P2 phiEF24C-P2 | ||
| NC_009904 Enterococcus phage phiEF24C, complete genome. Ent. phiEF24C phiEF24C | ||
| NC_028962 Staphylococcus phage phiIPLA-C1C, complete genome. Sta. phiIPLA-C1C phiIPLA-C1C | ||
| NC_028765 Staphylococcus phage phiIPLA-RODI, complete genome. Sta. phiIPLA-RODI phiIPLA-RODI | ||
| NC_021856 Bacillus phage phiNIT1 DNA, complete genome. Bac. phiNIT1 phiNIT1 | ||
| NC_023573 Staphylococcus phage phiSA012 DNA, complete genome. Sta. phiSA012 phiSA012 | ||
| KF021268 Staphylococcus phage phiIBB-SEP1, complete genome. Sta. phiIBB-SEP1 philBB-SEP1 |
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