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Merge pull request #713 from kbase/develop
Release 0.14.2
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| Original file line number | Diff line number | Diff line change |
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| name: KBase Workspace tests | ||
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| on: | ||
| pull_request: | ||
| types: | ||
| - opened | ||
| - reopened | ||
| - synchronize | ||
| - ready_for_review | ||
| push: | ||
| # run workflow when merging to main or develop | ||
| branches: | ||
| - main | ||
| - master | ||
| - develop | ||
|
|
||
| # TODO find out what minio ver we're using in CI / appdev / prod and use that | ||
| # TODO split tests into mongo related & non mongo related. Run the former once. | ||
| jobs: | ||
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| workspace_container_tests: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
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|
||
| - name: Set up Python 3.10 | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: "3.10" | ||
|
|
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| - name: Install dependencies and set up test config | ||
| shell: bash | ||
| run: | | ||
| # set up python dependencies | ||
| pip install pytest requests | ||
| - name: Run tests | ||
| shell: bash | ||
| run: | | ||
| sh scripts/run_tests.sh | ||
| workspace_deluxe_tests: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - java: '11' | ||
| mongo: 'mongodb-linux-x86_64-3.6.23' | ||
| minio: '2019-05-23T00-29-34Z' | ||
| wired_tiger: 'true' | ||
| ant_test: 'test_quick_coverage' | ||
| # the current production setup | ||
| - java: '11' | ||
| mongo: 'mongodb-linux-x86_64-3.6.13' | ||
| minio: '2019-05-23T00-29-34Z' | ||
| wired_tiger: 'false' | ||
| ant_test: 'test_quick_coverage' | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
|
|
||
| - name: Set up java | ||
| uses: actions/setup-java@v3 | ||
| with: | ||
| distribution: 'temurin' | ||
| java-version: ${{matrix.java}} | ||
|
|
||
| - name: Set up Python 3.7 # sample service is on 3.7, handle service is on sdkbase2.latest | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: "3.7" | ||
|
|
||
| - name: Install dependencies and set up test config | ||
| shell: bash | ||
| run: | | ||
| export HOMEDIR=`pwd` | ||
| # set up python dependencies | ||
| cd python_dependencies | ||
| pip install pipenv | ||
| pipenv sync --system | ||
| cd .. | ||
| # move to parent dir of homedir to install binaries etc | ||
| cd .. | ||
| # set up jars | ||
| git clone https://github.com/kbase/jars | ||
| export JARSDIR=$(pwd)/jars/lib/jars/ | ||
| # set up arango | ||
| export ARANGODB_VER=3.9.1 | ||
| export ARANGODB_V=39 | ||
| curl -O https://download.arangodb.com/arangodb$ARANGODB_V/Community/Linux/arangodb3-linux-$ARANGODB_VER.tar.gz | ||
| tar -xf arangodb3-linux-$ARANGODB_VER.tar.gz | ||
| export ARANGO_EXE=$(pwd)/arangodb3-linux-$ARANGODB_VER/bin/arangod | ||
| export ARANGO_JS=$(pwd)/arangodb3-linux-$ARANGODB_VER/usr/share/arangodb3/js/ | ||
| # set up handle service | ||
| export HS_COMMIT=08e18379817e16db920501b66ba62b66598f506c | ||
| export LOG_COMMIT=b549c557e3c519e0a55eadf7863a93db25cd6806 | ||
| git clone https://github.com/kbase/handle_service2.git | ||
| cd handle_service2/ | ||
| git checkout $HS_COMMIT | ||
| sudo chmod -R 777 . | ||
| cd lib/ | ||
| mkdir biokbase | ||
| cd biokbase/ | ||
| wget https://github.com/raw/kbase/sdkbase2/$LOG_COMMIT/log.py | ||
| cd .. | ||
| export HSDIR=`pwd` | ||
| cd ../.. | ||
| # set up sample service | ||
| export SAMPLE_COMMIT=6813fb148e95db2b11db6eea04f4d1d45cbb7119 | ||
| git clone https://github.com/kbase/sample_service.git | ||
| cd sample_service | ||
| git checkout $SAMPLE_COMMIT | ||
| cd lib | ||
| export SAMPLE_DIR=`pwd` | ||
| cd ../.. | ||
| # set up blobstore | ||
| wget -q -O blobstore https://github.com/kbase/blobstore/releases/download/v0.1.2/blobstore_linux_amd64 | ||
| chmod a+x blobstore | ||
| export BLOBEXE=$(pwd)/blobstore | ||
| # set up mongo | ||
| wget -q http://fastdl.mongodb.org/linux/${{matrix.mongo}}.tgz | ||
| tar xfz ${{matrix.mongo}}.tgz | ||
| export MONGOD=`pwd`/${{matrix.mongo}}/bin/mongod | ||
| # set up minio | ||
| export MINIO=$HOMEDIR/test_dependencies/minio/${{matrix.minio}}/minio | ||
| gunzip $MINIO.gz | ||
| chmod a+x $MINIO | ||
| # set up test config | ||
| cd $HOMEDIR | ||
| cp -n test.cfg.example test.cfg | ||
| sed -i "s#^test.temp.dir =.*#test.temp.dir=temp_test_dir#" test.cfg | ||
| sed -i "s#^test.mongo.exe.*#test.mongo.exe=$MONGOD#" test.cfg | ||
| sed -i "s#^test.minio.exe.*#test.minio.exe=$MINIO#" test.cfg | ||
| sed -i "s#^test.mongo.useWiredTiger.*#test.mongo.useWiredTiger=${{matrix.wired_tiger}}#" test.cfg | ||
| sed -i "s#^test.jars.dir.*#test.jars.dir=$JARSDIR#" test.cfg | ||
| sed -i "s#^test.blobstore.exe.*#test.blobstore.exe=$BLOBEXE#" test.cfg | ||
| sed -i "s#^test.handleservice.dir.*#test.handleservice.dir=$HSDIR#" test.cfg | ||
| sed -i "s#^test.sampleservice.dir.*#test.sampleservice.dir=$SAMPLE_DIR#" test.cfg | ||
| sed -i "s#^test.arango.exe.*#test.arango.exe=$ARANGO_EXE#" test.cfg | ||
| sed -i "s#^test.arango.js.*#test.arango.js=$ARANGO_JS#" test.cfg | ||
| cat test.cfg | ||
| - name: Run tests | ||
| shell: bash | ||
| run: | | ||
| ant javadoc | ||
| ant ${{matrix.ant_test}} | ||
| - name: Upload coverage to Codecov | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| fail_ci_if_error: true |
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