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@fmi-basel

Friedrich Miescher Institute for Biomedical Research

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  1. latent-predictive-learning latent-predictive-learning Public

    Code to accompany our paper "The combination of Hebbian and predictive plasticity learns invariant object representations in deep sensory networks” bioRxiv 2022

    Jupyter Notebook 21 5

  2. LSTree LSTree Public

    LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.

    Python 17

  3. neural-tangent-transfer neural-tangent-transfer Public

    Code accompanying our paper "Finding trainable sparse networks through Neural Tangent Transfer" to be published at ICML-2020.

    Jupyter Notebook 13 8

  4. stork stork Public

    A differentiable spiking neural network simulator

    Python 13 4

  5. glib-nature2018-materials glib-nature2018-materials Public

    Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"

    11 3

  6. RDCNet RDCNet Public

    Recurrent Dilated Convolutional Network

    Python 9 1

Repositories

Showing 10 of 72 repositories
  • gliberal-scMultipleX Public

    Feature extraction and linking of multiplexing data.

    fmi-basel/gliberal-scMultipleX’s past year of commit activity
    Python 8 BSD-3-Clause 0 18 1 Updated Aug 24, 2024
  • gfriedri-em-alignment Public

    Alignment tools used in the Friedrich lab.

    fmi-basel/gfriedri-em-alignment’s past year of commit activity
    Python 3 Apache-2.0 0 10 0 Updated Aug 13, 2024
  • stork Public

    A differentiable spiking neural network simulator

    fmi-basel/stork’s past year of commit activity
    Python 13 MIT 4 0 0 Updated Aug 13, 2024
  • ggrossha-ProteaseSpecificity-qPISA Public

    Code to accompany our paper "Massively parallel quantification of substrate turnoverdefines protease subsite cooperativity"

    fmi-basel/ggrossha-ProteaseSpecificity-qPISA’s past year of commit activity
    R 0 0 0 0 Updated Aug 9, 2024
  • GUIFold Public

    GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.

    fmi-basel/GUIFold’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Aug 7, 2024
  • guifold-alphafold2 Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    fmi-basel/guifold-alphafold2’s past year of commit activity
    Python 1 Apache-2.0 2,197 0 0 Updated Aug 7, 2024
  • fmi-basel/faim-jetraw’s past year of commit activity
    Python 0 Apache-2.0 0 3 1 Updated Aug 5, 2024
  • faim-robocopy Public

    A python-based UI for robocopy

    fmi-basel/faim-robocopy’s past year of commit activity
    Python 3 MIT 0 7 1 Updated Aug 5, 2024
  • fmi-basel/binary-activation-maps-sqp’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 5, 2024
  • splitrsync Public

    A tool to parallelize rsync based transfers

    fmi-basel/splitrsync’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jun 28, 2024

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