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Generate GC bins

Keiran Raine edited this page May 18, 2016 · 2 revisions

Please use the provided script: perl/bin/utils/generateGcBins.pl

USAGE: generateGcBins.pl genome.fa > gcBins.bed

(The script is not installed to bin as it is only used in setup.)

Once you have generated the file, remove any contigs not found in the centTel.tsv.

Once this is done bgzip compress and index with tabix.

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