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82 Open 230 Closed
82 Open 230 Closed
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Issues list

Controlling CPU usage for the DRAM.py distill pipeline for DRAM v.1.5.0
#358 opened Aug 19, 2024 by nataliesarno
Pathway abundances?
#357 opened Aug 8, 2024 by Manso002
set_database_locations results in TypeError: DatabaseHandler.set_database_paths() got an unexpected keyword argument 'camper_tar_gz_loc'
#355 opened Jul 25, 2024 by jehalter0
pop out errors when prepare databases
#354 opened Jul 11, 2024 by lingc31415
distill: AttributeError: 'list' object has no attribute 'concat'
#351 opened Jun 24, 2024 by marina-vn
Selection logic for gene_id in amg_summery.tsv
#350 opened Jun 17, 2024 by diego00012138
1
errors when prepare database
#349 opened May 25, 2024 by mengyuan-JI
3
genome_stats.tsv has the wrong tRNA count for MIMAG standards
#348 opened May 20, 2024 by AroneyS
3
DRAM2 environment.yaml
#346 opened May 11, 2024 by SF-Dragon
1
How long does populating step take?
#345 opened May 3, 2024 by jianshu93
3
Problem with database instalation (vog_latest_hmms.txt is empty)
#342 opened Apr 25, 2024 by ghost
1
2
Fail in processing vogdb
#341 opened Apr 1, 2024 by ShangLiii
6
VOGDB issue--extra enclosing folder
#340 opened Mar 29, 2024 by schmigle
1
4
Fix DRAM-setup.py v1.5.0 for missing )
#339 opened Mar 25, 2024 by npavlovikj
4
DRAM database installation problem; The subcommand mmseqs createindex DRAM_data/uniref90.20240308.mmsdb DRAM_data/tmp --threads 10 experienced an error
#336 opened Mar 8, 2024 by camillaln
3
problem about dramv-annotate
#335 opened Mar 8, 2024 by xjhzjucas
3
bug in v.1.5.0 on the DRAM-setup.py help message
#334 opened Feb 23, 2024 by hariszaf
1
Continue the "prepare_database" process
#333 opened Feb 23, 2024 by chenyj8
2
hmmpress not found during prepare_databases
#332 opened Feb 20, 2024 by carleton-envbiotech
1
dbcan2 url gone ??
#331 opened Feb 19, 2024 by EricDeveaud
3
DRAM 1.5.0 installation issues
#330 opened Feb 1, 2024 by karenhn
6
annotate genes using faa fasta files
#329 opened Jan 31, 2024 by avera1988
2
key error: K01566 when using DRAM-v.py annotate
#328 opened Jan 29, 2024 by yyyuechen
1
Is my DRAM_v run successful?
#327 opened Jan 28, 2024 by fhdbqr
What KEGG .pep files do DRAM devs use for KEGG.pep (and others if they want to comment!)
#325 opened Jan 4, 2024 by caity-s
ProTip! no:milestone will show everything without a milestone.