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Log messages (Warning and Error) could be improved for Accession Importer #15

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Jiu9Shen opened this issue Oct 23, 2019 · 0 comments

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@Jiu9Shen
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Jiu9Shen commented Oct 23, 2019

Current log messages are like:

Upload file name: germplasm_accession_test1.tsv
Germplasm: CDC Redberry (For user to track WARNING or Error messages next:)
WARNING: The db_id, 614, exists in chado.dbxref but not match to loading file external_database id: 617.
Germplasm: ILL 5588 (For user to track WARNING or Error messages next:)
WARNING: The uniquename/accession of exist, KP:GERM7725, in chado.stock does not match loading file accession number, ILL 5588, IMPORTANT!
WARNING: The db, ICARDA, has no match in chado:db.
Germplasm: CDC Redberry (For user to track WARNING or Error messages next:)
ERROR: The genus, Lens, species, culinarisWrong, has no matched organism in chado.organism.

Apparently, users other than developers may have problem reading these.

@Jiu9Shen Jiu9Shen changed the title Log messages (Warning and Error) could be improved for Accession Laoder Log messages (Warning and Error) could be improved for Accession Importer Oct 23, 2019
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