Tripal Germplasm Importer

This module will load germplasm data from file with a drush command. Data will be saved in Chado.

This module is developed following Tripal Developer's Guide: Creating Custom Data Loaders.

Dependencies

1. Tripal 3
2. PostgreSQL

Germplasm File Format

This module supports loading of spreadsheet file formats (txt, tsv):

Year 	Season	Cross No.	Maternal Parent	Paternal Parent	Cross Type	Seed Type	Cotyledon Colour	Seed Coat	Comment
2000	Winter	ABC	ABC_M	ABC_P	Backcross	Yellow  Yellow  Green Comment

Data Storage

Germplasm loaded by this module will be stored in chado in talbes: stock, stockprop, and stock_relationship. Germplasm will be stored in stock, their features will be stored in stockprop, and their relationships with parents will be stored in stock_relationship.

Controlled vocabulary terms required by this module are expected in chado or will be inserted.

Documentation

Please visit our online documentation to learn more details about this module.