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@UofS-Pulse-Binfo

Pulse Bioinformatics, University of Saskatchewan

Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.

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  1. analyzedphenotypes analyzedphenotypes Public

    Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

    PHP 1

  2. nd_genotypes nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    PHP 4 1

  3. genotypes_loader genotypes_loader Public

    A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

    PHP 1 2

  4. chado_custom_search chado_custom_search Public

    Provides custom search functionality for those who don't wish to use Drupal Views.

    PHP

  5. tripal_qtl tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    PHP

  6. vcf_filter vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1

Repositories

Showing 10 of 39 repositories
  • tripal_germplasm_importer Public

    Tripal 3 importer for saving germplasm into chado stock tables.

    UofS-Pulse-Binfo/tripal_germplasm_importer’s past year of commit activity
    PHP 1 GPL-3.0 0 2 0 Updated Jun 27, 2024
  • tripal_ws_brapi Public
    UofS-Pulse-Binfo/tripal_ws_brapi’s past year of commit activity
    PHP 0 0 4 0 Updated Jun 27, 2024
  • tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    UofS-Pulse-Binfo/tripal_qtl’s past year of commit activity
    PHP 0 GPL-2.0 0 4 0 Updated Jun 27, 2024
  • nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    UofS-Pulse-Binfo/nd_genotypes’s past year of commit activity
    PHP 4 GPL-2.0 1 14 (1 issue needs help) 0 Updated Jun 27, 2024
  • tripal_bibtex Public

    A BibTEX importer for Tripal Publications.

    UofS-Pulse-Binfo/tripal_bibtex’s past year of commit activity
    PHP 2 GPL-3.0 2 2 0 Updated Jun 27, 2024
  • helium_exporter Public

    Provides a data export of germplasm and phenotypic data for visualization using Helium.

    UofS-Pulse-Binfo/helium_exporter’s past year of commit activity
    PHP 0 0 0 0 Updated Jun 11, 2024
  • lims_rawseq Public

    Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.

    UofS-Pulse-Binfo/lims_rawseq’s past year of commit activity
    PHP 0 0 3 0 Updated Mar 14, 2024
  • vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    UofS-Pulse-Binfo/vcf_filter’s past year of commit activity
    PHP 1 GPL-2.0 0 13 0 Updated Feb 12, 2024
  • kp_searches Public

    Provides custom search functionality for KnowPulse.

    UofS-Pulse-Binfo/kp_searches’s past year of commit activity
    PHP 0 GPL-2.0 0 0 0 Updated Jan 26, 2024
  • rawphenotypes Public

    A Tripal module for storing raw phenotypic data. Specifically meant to help researchers contribute raw data, visualize summaries and download for further analysis.

    UofS-Pulse-Binfo/rawphenotypes’s past year of commit activity
    PHP 2 2 23 0 Updated Aug 28, 2023
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