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Feature/ccpp #186
Feature/ccpp #186
Commits on Mar 5, 2019
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* create branch for GMTB from 05Mar2019 global-workflow master, 595d44c
* add changes needed to run CCPP version of NEMSFV3GFS -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn -- define suite definition file (CCPP_SUITE) in config.fcst -- copy suite definition file to run directory -- add ccpp_suite variable to atmos_model_nml portion of namelist NOTE: this assumes sorc/fv3gfs.fd is pointing to the CCPP version of NEMSFV3GFS
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Commits on Jul 22, 2019
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update to 19Jul2019 develop branch
Squashed commit of the following: commit f0c7afe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 16 18:23:31 2019 +0000 VLab Issues #66082 - GFSv15.1.2 nwprod changes commit 1652d22 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 8 17:22:26 2019 +0000 VLab Issue #65754 - merge final GFSv15.1.1 into master commit 6ca5556 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jun 11 13:24:26 2019 +0000 VLab Issue #64845 - update UFS_utils to v1.0.0 tag commit ad03fe5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 10 16:00:47 2019 +0000 VLab issue #64274 - missing ozinfo files in checkout.sh added commit 18341fc Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jun 7 14:20:35 2019 +0000 Patch missing lowres fix file, disable vrfy jobs from first helf cycle and clean up extra files commit d919db6 Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 22 14:33:59 2019 +0000 VLab Issue #64141 Merge ufs_utils into master commit 2acb5d3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed May 15 15:42:03 2019 +0000 VLab Issue #58894 - SLURM updates for free-forecast mode commit 475967b Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri May 10 19:36:13 2019 +0000 VLab Issue #58894 - changes for SLURM on R&D machines commit 8619f47 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 23 19:29:54 2019 +0000 update link_fv3gfs.sh to add correct directory paths for making soft links of post and wafs source directories commit 839a816 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Apr 22 21:45:54 2019 +0000 script update per NCO's request; add track files to archive list commit 8250561 Merge: a1af4f8 0749708 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 17 00:01:27 2019 -0400 Merge branch 'master' of gerrit:global-workflow commit a1af4f8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 17 00:00:51 2019 -0400 redefine SIGLEVEL in ush/global_chgres_driver.sh to allow it to be sent in from parent driver script commit 0749708 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 20:01:29 2019 +0000 Vlab issue #40471. Add new parallel version of chgres based on ESMF regridding. Contains the same surface pressure adjustment, vertical interpolation and surface initialization as the serial version of chgres. Can ingest tiled FV3 data, FV3 nemsio data, GFS nemsio data, GFS sigio/sfcio data. Squashed commit of the following: commit c656e6279e2c5d715f3403f47a8be3398e3932a7 Merge: b400492 04f0e75 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 19:57:42 2019 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit b400492d4910154a60e73d681b920956502b6a2e Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 19:56:51 2019 +0000 chgres_cube branch: This commit references #40471. Move chgres_cube program to the sorc directory under chgres_cube.fd. Change-Id: I49f02aca17e79d262fd353f66293f3ebe4644b8b commit cc1c409c2aae9347546e15e1b40b0af1ed6ab61f Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Apr 3 13:30:46 2019 +0000 chgres_cube branch: This commit references #40471. Add threads to routine VINTG. Add OMP_STACKSIZE variable to Cray run script. Change-Id: Ibb3d10256d367c7a4520b0feeeba0e9d1a207141 commit 8fe3c48409c437be71f4fb4bd87e0b09f70c53b5 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 2 17:37:18 2019 +0000 chgres_cube branch: This commit references #40471. Fix bug in search routine by checking original field (stored in field_save) instead of the adjusted field. Add sea ice default logic from original serial version of chgres. Both updates change results. Add threading to search routine. Change-Id: I46278241828a9020851530594d75e3362712353f commit 0ba7dcff2c14128a0792c30a5585a3d5da0754f5 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 18:42:25 2019 +0000 chgres_cube branch: This commit references #40471. Update Theia config files and run scripts for new paths. Change-Id: Ic244b4eabff9ac5c4ebe6e23f6e7845af65799e2 commit ccc1c1e541d27c4334f57ce731c92009b25fefb3 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 18:35:05 2019 +0000 chgres_cube branch: This commit references #40471. Add new Theia config file for running with spectral gfs sigio/sfcio files. Change-Id: Ice67f73de40b82943ed6469f7a4f7f7477d669ff commit 614113255549be1c9abfc6acc5e8e0cb04dd1201 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 14:40:12 2019 +0000 chgres_cube branch: This commit references #40471. Updates for compiling and running on Cray. Remove compilation option for WCOSS phase 1/2. Machine will be retired this year. Change-Id: I7a9d2c0e5c6e6b63908798eda829c443f80c1648 commit 3e02203853376d1f0504ad618934b8c0adebc660 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Mar 6 21:31:08 2019 +0000 chgres_cube branch: This commit references #40471. Update paths in Dell config files. Change-Id: I6b82400ec53cdce2602c08a59059848b9adc8dd4 commit 595919780c34ae1f0798b62131be37cab26204ea Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Mar 6 16:33:01 2019 +0000 chgres_cube branch: This commit references #40471. Numerous updates so program can ingest/process spectral gfs data in the 'old' sigio/sfcio format. Correct units error when reading snow depth from fv3 tiled warm restart files and fv3 tiled history files. Program expects snow depth in millimeters. Change-Id: I332468857c20e48c645b038469db3848fafd3a37 commit 778af6b5eae7c728dd4598736bf88ac43f98cddd Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 20 13:26:21 2019 +0000 Revert "chgres_cube for warm restart" This reverts commit 00c978c1c119850ec7de6d4dcc3426567717ecea. commit 2f920bd440216524adc211b1850784b6ab0293ee Merge: 257f8aa 00c978c Author: Scott <scott.gregory@noaa.gov> Date: Tue Feb 19 20:51:52 2019 +0000 Merge branch 'chgres_cube_warm_restart' into chgres_cube commit 00c978c1c119850ec7de6d4dcc3426567717ecea Author: Scott <scott.gregory@noaa.gov> Date: Tue Feb 19 20:49:39 2019 +0000 chgres_cube for warm restart commit 257f8aa7e6386f860db5d74697fbd9daf0e2e67f Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 13 15:56:14 2019 +0000 chgres_cube branch: This commit references #40471. When using fv3 global gaussian nemsio files, convert snow depth to millimeters and roughness length to centimeters to be consistent with the fv3 tiled history and restart files. Change-Id: I721f8fd38f0dbe528883af1cd3d62808345930d0 commit d8256f42759b509a05e685cb81dfdba73eb0d939 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 13 15:09:58 2019 +0000 chgres_cube branch: This commit references #40471. New option to process spectral gfs gaussian nemsio files. Change-Id: Ie387df4daa40c770d6adbd2fcc46e8ada3889d49 commit 65e5949113e79c9c875ffcce3d9b8e6f3038dc26 Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Feb 11 18:51:47 2019 +0000 chgres_cube branch: This commit references #40471. Add script for running on Theia using slurm. Change-Id: I66ed45f8389cd4887db763317186c773aaba95e4 commit 448d6bd1b9378bfd9d01e59db6df38913d1ab1c9 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Feb 8 20:02:43 2019 +0000 chgres_cube branch: This commit references #40471. static_data.F90 - Updates for new gridgen_sfc file naming convention. Change-Id: I386f9a0f7ae2bc443634420b64abd8a7017d1b27 commit 0d76a9d7c1c3dfda78c5e4269407dab08a0ec697 Merge: ba27618 cc32f99 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jan 25 19:15:35 2019 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit ba276186b9113cb0e3adbe71475300c4c1738d9a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 22:08:02 2018 +0000 chgres_cube branch: This commit references #40471. Update theia config files for tracers. Change-Id: Ibcafbc82dc4c6fff58b56cfa163d101abd66cdb5 commit bc7b201febc3613f0c4e5c394f54117147b0f768 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 21:14:25 2018 +0000 chgres_cube branch: This commit references #40471. Update Dell config files to include tracers. Change-Id: Ie30bb81dd10811e16d39e9e919b1c32590e20b8e commit 3375b682269240d05ede7c568d12ac5e13d2d4a3 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 19:39:47 2018 +0000 chgres_cube branch: This commit references #40471. Add namelist option for users to select which tracers to process. Update cray config files accordingly. Change-Id: Ibeffdb44ab550ab3f5514bca2153a35bb5dc9051 commit d9d4408e4949871de57a4b956312b55c64c1afd7 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 18:10:56 2018 +0000 chgres_cube branch: This commit references #40471. Numerous updates so the program can process a user-selected set of tracers at run time. Change-Id: I8679b5a327f457fb745927dfc7ca11926a2258ce commit 9b9c92d87aec005c23d22a1b416cf86d3bd9d297 Author: George Gayno <george.gayno@noaa.gov> Date: Tue Oct 30 17:43:16 2018 +0000 chgres_cube branch: This commit references #40471. Minor fix to two error messages. Change-Id: I423986d9ab7f62c4da79850d3352c5f0b2190fb2 commit 0b889ad6328ef0beb7a83feb57563e8e9856b895 Author: George Gayno <george.gayno@noaa.gov> Date: Tue Oct 30 12:26:30 2018 +0000 chgres_cube branch: This commit references #40471. Remove hardwired atm/surface files names in routine "define_input_grid_gaussian". Improve error handling in that routine. Change-Id: I18d894792a44ae4b101891d7155a397b8f5959cd commit 092bc27ffdd37562ccd91372cfaff91c79f5794a Author: George Gayno <george.gayno@noaa.gov> Date: Thu Oct 25 15:00:19 2018 +0000 chgres_cube branch: This commit references #40471. Horizontally interpolate surface pressure assuming a standard lapse rate (per recommentation of Phil Pegion). This reduces model initialization shock near steep terrain. Change-Id: I9748acde579605a76fc387124c11c31c7dfa4474 commit eebdf594c1792330fde03239d068accd72576df6 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 9 20:16:20 2018 +0000 chgres_cube branch: This commit references #40471. Standardize error handling. Change-Id: I861798e99b3d1c7c116e184dc04e3fc782de8347 commit d07ec3468703143b6ca1880cec8b9d78dfe34dba Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Oct 5 17:14:15 2018 +0000 chgres_cube branch: This commit references #40471. Add a basic prolog to the top of each module. Change-Id: I47741d78197c2f8f8153ef6256235bae896981b6 commit 780029c6a6d0d3ec628e6d85cceb480840b2968b Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Oct 4 16:33:46 2018 +0000 chgres_cube branch: This commit references #40471. Cleanup of variable declarations. General cleanup. Change-Id: I978c4d6162aa1eaad7efd8523518bc05f394e690 commit 9dbeb5a4bf20d7580717b41bf17d875ff27dd18c Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Oct 3 13:48:42 2018 +0000 chgres_cube branch: This commit references #40471. Add global attribute to atmospheric and boundary files that specifies which input data source was used. Update theia config files to explictly define all input source files. Change-Id: Ifdcc176db26c7070a1ff550d2aed78b2fdde096e commit 9626a74d9dfe55a9df514eff83121a028963df3f Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 2 18:11:48 2018 +0000 chgres_cube branch: This commit references #40471. Remove hard-wired sfc/nsst input file names. Update config files for cray accordingly. Change-Id: I5bbac6304f375635d9e5ff5620a883917c06eb5c commit bfd4c4e4e04aa19b5d6eb1a163231def60c26e65 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 2 16:56:03 2018 +0000 chgres_cube branch: This commit references #40471. Remove hard-wired input grid atmospheric file names. Update Dell config files accordingly. Change-Id: I6f6cbec751acea32d516e0a67f4dafe97cd99c2c commit 1727ae775e2da4c3de1a1fff2a453dcd30e4273d Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 28 19:28:52 2018 +0000 chgres_cube branch: This commit references #40471. Add comments to input_data.F90 Change-Id: Ic22435948bcdca68840aad989c3b942948880525 commit 3eb8afaf720af694793e3fb25eb062afb7da6017 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 28 13:57:20 2018 +0000 chgres_cube branch: This commit referenes #40471. Updates for compiling and running on Cray. Point to beta v8.0.0 of the esmf library. Change-Id: I2ec308278481c9fa9758af3db8d7ef031b779644 commit 58e0e214e4be5d8d40a3cc6a3e813fe80f8f4aeb Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Sep 27 19:45:32 2018 +0000 chgres_cube branch: This commit references #40471. Updates for compiling on Dell using a local copy of beta v8.0.0 of esmf. Change-Id: I21c367827f5a8788db8de635ea283f536a3fbdd0 commit 0631e3830b65854229fac8dccc148b13279cbac8 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Sep 27 15:06:19 2018 +0000 chgres_cube branch: This commit references #40471. Update Theia build to use esmf beta v8.0.0. That version corrects a problem with FieldScatter and FieldGather for large array sizes (such as 3-d t1534 fields). Add extrapolation method NEAREST_STOD to the atmospheric call to RegridStore. That eliminates problems with unmapped points encountered for certain grid configurations (Ex: T1543 gaussian to C1152). New routine "read_input_atm_gaussian_file" for reading fv3gfs gaussian history files in nemsio format. Remove obsolete namelist entries from all run config files. Change-Id: Ibf12ec0102e621cf94761548075f982d765c5f6e commit 07160a501362413ca83698bedcba97c6e9a642bd Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 25 17:33:24 2018 +0000 chgres_cube branch: This commit references #40471. Replace logical 'restart_file' - which determined whether the program was to ingest tiled history or restart files - with 'input_type'. The latter is set as 'history'/'restart'/'gaussian' for tiled history/tiled restart/gaussian history files. Add routine (read_input_nst_gausian_file) to read nst data from gaussian history file to input_data.F90. Change-Id: I577ba3f319d2c0ea1d99598cf55cc8147bcadb97 commit 7cf64d52594e8e30338cd1f8bae424b81289125a Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 24 13:32:47 2018 +0000 chgres_cube branch: This commit references #40471. Updates for running on Cray. Change-Id: Ib4e42021fd31619c4d60064cf0320cfdbd587414 commit 68be11f25c06eab4eb70f0573bddb67a8601b0fa Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 24 12:40:57 2018 +0000 chgres_cube branch: This commit references #40471. Move read of terrain from model_grid.F90 to input_data.F90. This allows the program to use the terrain from the atmospheric files when processing the atmospheric fields. This terrain should be more consistent with the atm fields than what is in the orog files. This change will also improve flexibility as the number of input data sources increases. For example, the gaussian data has no orog files, so terrain must be read in from the restart files. Change-Id: Iff532b85096ec48afd3ca7e1658ab66c86737dc5 commit a3c5fc0edabe9d02ce3b69d22c136bb71ca44e0f Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 21 13:23:31 2018 +0000 chgres_cube branch: This commit references #40471. input_data.F90 - Place 2-d to 3-d wind conversion in its own routine. Change-Id: Iad7c8460fbcbc9e9d4cbbd2c5529331c9604ebda commit d8b8c675e1e9ab386eb7cc5058e2f7e6f368304b Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 21 12:16:01 2018 +0000 chgres_cube branch: This commit references #40471. Change variable name 'levp_input' to 'levp1_input'. Change-Id: Iaa91b691d8747b6906ecd10ddb0f61d40855d5e7 commit d9382ae01c4b0289047c6390a1c234d6ef8fb7e1 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 18 17:51:43 2018 +0000 chgres_cube branch: This commit references #40471. Logic to process surface fields from an fv3 gaussian nemsio file. Change-Id: I486960805c2c8dd4020438aba11ed8504fac3739 commit 253834853c3c5e0e76257c9402135bfe0de64c9f Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 14 19:31:02 2018 +0000 chgres_cube branch: This commit references #40471. Add some logic to ingest fv3gfs gaussian nemsio files. Currently, only tiled netcdf files may be ingested. Change-Id: Ibc8606fcb63f9c955e636e0200bc8b634155b559 commit 754e2f8161b60a0b7c8bea1f3c58a07afbbcc65d Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 7 20:40:48 2018 +0000 chgres_cube branch: This commit references #40471. Add script and sample configuration files for running on Dell. Change-Id: I6999f9a9ad43b4d62d72e181c431e85dbd48899c commit fa7d51a9795f0e85ece97655434233b2f3433ac0 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 7 14:48:24 2018 +0000 chgres_cube branch: This commit references #40471. Update regional boundary condition logic to include a blending halo located within the computational grid. Halo indices are now defined with respect to the computation grid instead of the whole grid (computational plus lateral halo). Change-Id: I4429659172403c135c16df530e592a80e7912eab commit 94d1f288ab2994f851862338e06625c96aaa915a Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 4 13:48:36 2018 +0000 chgres_cube branch: This commit references #40471. Update atmospheric write routine to write each tile on its own mpi task. Previously, all tiles were written sequentially on task 0. Change-Id: Ica45f3320970c105f2cda42f1becd83a311f784e commit d18199b2bd07a22976fd04181cda179990a5bebd Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 31 18:42:02 2018 +0000 chgres_cube branch: This commit references #40471. Remove all 'goto' statements. Change-Id: I3a66a5254df2d3e5f3cb6bf12f44d96ead3b9f96 commit 17863752b96a772ee5cd6bfd9c96b904a77f95f5 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 31 14:40:24 2018 +0000 chgres_cube branch: This commit references #40471. Read input history file tiles in parallel instead of sequentially. Change-Id: Ifa29876014fe516249c788d3f2f81f543ffda171 commit 9cba10d151de587b6b63644f77bf74b073cb16c8 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Aug 30 20:22:06 2018 +0000 chgres_cube branch: This commit references #40471. Update routine "read_input_atm_restart_data" to read each tile on its own mpi task (or pet). Previously, each file was read sequentially on task 0. Tests on theia showed results do not change, and wall clock time is reduced. Change-Id: I30899db560be58586871dc886283f0766957bef3 commit 4a59accf411686b26128d93e34ad63d9892facff Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 29 20:06:44 2018 +0000 chgres_cube branch: This commit references #40471. Add config files for running the following transforms on Theia: (1) C768 L64 to C768 L91; (2) C768 L64 to C1152 L91 Both transforms ran sucessfully. Remove some diagnostic print. Change-Id: I698d92a016010ad9bc01171ecfe015802275b2ee commit fd3736a88cf1913ce6f9896f734be819f354d9f3 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 15 15:27:16 2018 +0000 chgres_cube branch: This commit references #40471. Add option to read in a weight file for part of the atmospheric interpolation. If weight file not available, then FieldRegridStore is called as before. Using weight file reduces wall clock time slightly and does not change results. Change-Id: I956bb094315f723840c62a7ee3dd2faeadba70c1 commit f3bb2e3ed2d77e53c6da98c6241c62491316d88f Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Aug 14 18:39:15 2018 +0000 chgres_cube branch: This commit references #40471. Remove extra calls to FieldRegridStore. Results do not change. Wall clock time reduced slightly. Change-Id: Icc93054d844752c5299bdc64c4c117c291b86a09 commit fbb566f9143d1b3a686f351d95352d1de4a9489e Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Aug 6 20:28:20 2018 +0000 chgres_cube branch: This commit references #40471. Remove subroutine 'flip' and replace with F90 statements to reverse arrays in 'z' direction . The latter is much faster. Change-Id: I1a405cc48c7e1981c908e64c77e0d65e0e875caa commit 963246d6061c4dd49001cc226e9df082931b5037 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 3 20:12:02 2018 +0000 chgres_cube branch: This commit references #40471. Add two new tests for Theia. Change-Id: I2fbb5a33ca236bf289eb643b0d361b1fe46b3419 commit 339b732caad6aa3c19fc0c533799d90978b3b16c Author: George Gayno <george.gayno@noaa.gov> Date: Fri Jun 22 19:20:19 2018 +0000 chgres_cube branch: This commit references #40471. Update 'make.sh' to build on WCOSS Phase 1/2. Change-Id: I9f6e0fd0154c2874be61af85a8e6b16946f70704 commit cbbb9644a5ef56acecd2cfc03e805414e5e67035 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jun 20 20:14:32 2018 +0000 chgres_cube branch: This commit references #40471. Add 3-d temperature and delta-p to target grid atmospheric netcdf file. Change-Id: I505df46a097c772b2cb0c792e18a0db66f9d0d20 commit dcaaba32b355e93720331fe5c0a3ee17d2c64d60 Merge: d868f97 eb1a299 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jun 15 13:36:09 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit d868f9737108d583451971bd7f7ac66d9792244a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jun 15 13:32:07 2018 +0000 chgres_cube branch: This commit references #40471. When ingesting 'restart' files, get model top pressure from the "fv_core.res.nc" file. Change-Id: Ib9856ceb7743ce8c9be6692128e4616c1c7d4e76 commit bce294fc9b507cdaacdda89af652fda786746d49 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Jun 14 17:59:41 2018 +0000 chgres_cube branch: This commit references #40471. New namelist variable 'restart_file' to control whether input files are 'restart' or 'history' files. Change-Id: I969651711fa83c038574093447a7b8d4c05c41ba commit 73ddc22b528362edc7b5f5a05de94301bc00e9ba Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Jun 13 21:27:21 2018 +0000 chgres_cube branch: This commit references #40471. Add logic to process GFDL microphysics tracers. Change-Id: Iad9e15cc6477ecfc01120400826c0cf6e660a1ce commit 2a82e038a21fc6de82189362133d92a329ad101f Author: George <George.Gayno@noaa.gov> Date: Mon Jun 11 19:09:45 2018 +0000 chgres_cube branch: This commit references #40471. Update "make.sh" for building on Dell. Change-Id: Iba4915467e315ebc83d4fed7e838391681a84a5f commit 9f9d9531ae37ca81608892b50d390d5c3513ce1d Author: George <George.Gayno@noaa.gov> Date: Fri Jun 8 20:22:51 2018 +0000 chgres_cube branch: This commit references #40471. Preliminary modifications to read input atmospheric fields from 'restart' files. Currently, program only ingests atmospheric 'history' files. Change-Id: Iac0d3cf7672d108653ddb9da620b8cf68b361877 commit 94658f59fbb7d9d21bf773d1f8cd0a71dc485e92 Author: George <George.Gayno@noaa.gov> Date: Thu Jun 7 20:57:44 2018 +0000 chgres_cube branch: This commit references #40471. Update to ingest tiled "restart" surface files. Previously, only tiled "history" files could be ingested. 1) New routine to read tiled restart surface files - "read_input_sfc_restart_data" 2) Rename existing read routine to "read_input_sfc_history_data". 3) Add logic to determine if surface file is a 'restart' or 'history' file. Logic checks for 'xaxis_1' in the header. If it exists, a 'restart' file is assumed. Change-Id: I0ab138d165d7f2646440acc07ee5691c726a1e85 commit 822ccffc37ee4f81398ebfdcfbbad8e39d946149 Author: George Gayno <george.gayno@noaa.gov> Date: Mon May 21 18:09:17 2018 +0000 chgres_cube branch: This commit references #40471. New routine "write_fv3_atm_bndy_data_netcdf" that outputs an atmospheric lateral boundary file. Supports stand-alone regional grids. Change-Id: Ic6a63a4d915ba7fd870e9c151ff274f90df0a059 commit d11d7cd2d534a3ea2756928a00423d7ca5c68236 Author: George <George.Gayno@noaa.gov> Date: Wed May 16 20:47:04 2018 +0000 chgres_cube branch: This commit references #40471. Add "extrapMethod" argument to atmospheric regridding. This prevents a random glitch when interpolating winds from the center of the grid box to the box edges. Add halo removal logic for atmospheric file. Fix bug in halo removal logic for surface file. Change-Id: Idbee39ded541db7cb11dadc4b488759a736ce7b4 commit 325b729346b4303d2c2d142d6685ae5cb2e5b167 Merge: 3e46722 cebba5c Author: George <George.Gayno@noaa.gov> Date: Fri May 11 14:21:49 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 3e467223e7ce3d23b3e0a8a8f47d5e233fa3c69a Merge: 00921a5 ac03c87 Author: George Gayno <george.gayno@noaa.gov> Date: Thu May 3 19:55:50 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 00921a50e7c7dffe3bc0194e1a9b93fcbf87cde5 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Apr 30 17:33:17 2018 +0000 chgres_cube branch: This commit references #40471. Update to use v7.1 of ESMF instead of a beta snapshot. modified: chgres_cube/sorc/make.sh Change-Id: I0fc15198c3abb2c28ee758df8dc37bd3c008924c commit 930b87fd892009906db444e44fefd602248d883e Author: George Gayno <george.gayno@noaa.gov> Date: Tue Apr 24 13:55:34 2018 +0000 chgres_cube branch: This commit references #40471. New routine "write_fv3_atm_header_netcdf" to write the "gfs_ctrl.nc" header file, which contains tracer and vcoord information. Modify to read input surface data from tiled model history files. Change-Id: I39f0d573c2cae3b17f4758973d7bf002dcd7afbf commit 937997b65ee77b09ac69151db9388f0c107d38b7 Merge: ca61546 0e9d2d1 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Apr 20 17:36:18 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit ca61546139daa5e51a409fa6a538503c10dd5742 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Apr 13 13:32:40 2018 +0000 chgres_cube branch: This commit references #40471. New routine 'vintg' for vertically interpolating between the input and target hyb-sigma levels. This routine is taken from the GFS CHGRES code, which assumes the lowest model level in index '1'. This is opposite the fv3 convention. Therefore, add a vertical 'flip' of the fv3 data after the read and before the write of the atmospheric files. New routine 'compute_zh' to compute heights. To save memory, reduce the number of 3-d arrays during write of atmospheric file. Change-Id: Ia256b6d348d277119ab1e23da6d00f3653dd8eeb commit 6c95bf7246b74edef319814a13f3667b1cdcb6d7 Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 20:52:51 2018 +0000 chgres_cube branch: This commit references #40471. New routine 'newpr1' which computes 3-d pressure based on 'ak' and 'bk'. Add esmf fields to hold data on target grid before vertical interpolation (denoted by 'b4adj' in the variable name). Change-Id: Ic9c9175f268f124c0d63498a9e771fe679456782 commit 4c5b40a11daf499c55f9000224c08dc3589d7d98 Merge: ebee537 6482117 Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 17:36:57 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube. commit ebee53765fe252dec7517d332771ef7a847670cf Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 17:22:27 2018 +0000 chgres_cube branch: This commit references #40471. Several updates to the atmospheric data processing: 1) Add horizontal interpolation of 3-d temperature. 2) Read input data from the tiled model history files instead of the coldstart files from CHGRES. These files store the winds unstaggered (at the center of the grid box). 3) Add read of target grid 'vcoord' file. 4) New routine 'newps' to adjust surface pressure to new terrain. Change-Id: I653dbc741f785b42ce6fba51333530dd873bd9ef commit 181f712adb0310f098b1f2c1ce2d6b870fd81a0b Author: George <George.Gayno@noaa.gov> Date: Wed Apr 4 14:02:30 2018 +0000 chgres_cube branch: This commit references #40471. Add read of vertical coordinate file to get 'ak' and 'bk' for the target grid. Change-Id: I3ba9fbc8e5205e3c5ef6a04da955d52094197ce9 commit 25c8b572cd74aae0d826ed805ce75b47acad95e8 Merge: 7e00515 7b3afc8 Author: George <George.Gayno@noaa.gov> Date: Tue Apr 3 12:16:15 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 7e00515e2e1069d491f359c1eee9a63f84000732 Merge: c2ff052 8725547 Author: George <George.Gayno@noaa.gov> Date: Tue Mar 27 19:48:54 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit c2ff0525532b1ed078c4e6bb258dd46f85e40ff6 Merge: 8fd71e9 0c7e545 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Mar 22 14:20:13 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 8fd71e907923b2df457d8cb80550e4a0ced1ea2d Author: George Gayno <george.gayno@noaa.gov> Date: Tue Mar 20 18:50:13 2018 +0000 chgres_cube branch: This commit references #40471. Update theia build to point to official esmf version 7.1.0. Add "module use" statement for locating NCEPLIBS. Change-Id: If06900baa3c70b9713a3d15b25d2a89fd569d5a8 commit 5a61108655e8f253fe1cddabc3cc9dd92f2fcf04 Merge: f944749 7fdcd04 Author: George <George.Gayno@noaa.gov> Date: Mon Mar 19 18:18:58 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit f944749861cc6ecfcb8439c38525f42184d2eda1 Merge: a47764d 3169078 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Mar 5 13:45:28 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit a47764d197d896b3aced87a390571ac7b9e3bb9a Merge: 944f618 ecf67b6 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 22 18:24:50 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 944f6180e7500e6238685e8ae51d4d1a68c9f919 Merge: 73c0c43 03b9b56 Author: George <George.Gayno@noaa.gov> Date: Tue Feb 20 13:56:03 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 73c0c436bd431dd2b7bb88e87046d42e69bb1d80 Merge: f697860 6b2de36 Author: George <George.Gayno@noaa.gov> Date: Mon Feb 12 13:36:35 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit f697860ab83ff8bcec2383dbe8d4cee86de1b84c Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 8 21:46:24 2018 +0000 chgres_cube branch: This commit references #40471. Minor script changes related to recent master merge. Change-Id: Ibd0d61e3d7da3be6675195d0d8c3b4def38f70d4 commit 5024394887414c4f65e6921419ac8e1550108be7 Merge: 72778cb 2b9a059 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 8 21:33:29 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube Change-Id: Iadb058b872c1d578acf9895a1321923a8bd71c73 commit 72778cb00dac9f97cfdb5a6085025c80cccaee91 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 29 19:32:42 2018 +0000 chgres_cube branch: This commit references #40471. To ensure bit identical results for varying task counts, the following modifications were done: (1) The argument "isrctermprocessing=1" was added to all calls to ESMF_FieldRegridStore; (2) The argument "termorderflag=ESMF_TERMORDER_SRCSEQ" was added to all calls to ESMF_FieldRegrid. Change-Id: I354cbd94b5c9e63a8e5635dfb2a2a32fe91426e3 commit e263d0e6d5fce3f24cd0f15ae849be412fff161f Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 8 21:04:00 2018 +0000 chgres_cube branch: This commit references #40471. Move all interpolations of surface fields into their own routine ("interp"). Change-Id: I1c1ffd972566092e17f9850bbfdfce2b3965abe2 commit 574bb6f72998099b7aacc8a15220de2637ba727b Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 8 19:33:52 2018 +0000 chgres_cube branch: This commit references #40471. Move processing of nst fields to surface.F90 to ensure consistency between TREF and SST. This was a problem with the OPS version of CHGRES (see issue #44638.). Remove now obsolete routine nst.F90. Change-Id: Ifb7bf631ef75cdf2af8eb0ff3f77e236996224db commit bdb63dd83f7bf23fe198650fc84cc631428d7d6f Author: George Gayno <george.gayno@noaa.gov> Date: Thu Jan 4 19:46:18 2018 +0000 chgres_cube branch: This commit references #40471. Change default value of SST to be the same latitudinal dependent guess as that used for TREF. Change-Id: If2d0f1f13d4f7bb318c11003eb062c53609f1d92 commit 735e35ba6efcafe94db47540416b64578d13bb97 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Jan 4 14:38:19 2018 +0000 chgres_cube branch: This commit references #40471. Simplify driver. General cleanup. Change-Id: I1b227f5f909ec42e4a2a664ccd324df0a2a19da8 commit 8f7e672cdcd40795afa721dbd7f6347ac876ab1f Merge: 9743273 3073c50 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jan 3 17:29:16 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 9743273c09dfb4b4d8931fb0583198d57274dd23 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jan 3 17:18:43 2018 +0000 chgres_cube branch: This commit references issue #40471. Add interpolation of u/v winds (on the staggered grid). The method is based on the vector interpolation in the model's write component (by Jun Wang): (1) convert from 2-d cartesian components to 3-d. (2) Horizontally interpolate the 3-d components to the target grid. (3) Convert from the 3-d components back to 2-d. Change-Id: If5110c8c20db8c5ad110f74a9f219e97799705f8 commit 1d90bf06dde893c5f28873fb016f874dc9dfc7e0 Merge: 04e2f1e 7bf492a Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 21 19:16:33 2017 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 04e2f1ec01dd032fd60893d54ba280759737521f Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 21 19:12:01 2017 +0000 chgres_cube branch: This commit references #40471. Add read of latitude and longitude at the 's' edge and store as ESMF fields. Lat/lon is required to interpolate the staggered winds. Change-Id: I1f5d2a26522547a8887942b386175f65c6de9767 commit df04cc2fa792e0ed0b271e4bd395a400d80f3993 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 20 20:19:32 2017 +0000 chgres_cube branch: This commit references #40471. Rename routine "get_model_mask" to "get_model_mask_terrain" and remove read of lat/lons from the orography file. New routine "get_model_latlons" to read lat/lon from the 'grid' files. The 'grid' files have lat/lon on the staggered grid, which will be needed when interpolating winds. The orography files only have lat/lon on the 'A' grid. Change-Id: If291bb2f0b1e2294b52e7775347f756cdf68c6c5 commit e76e7f236a520428e35c2d9f79b18dea2fd45fe5 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 20 14:55:19 2017 +0000 chgres_cube branch: This commit references #40471. Switch from ESMF 7.1.0bs39 to 7.1.0bs44 (Theia). Latest version corrects bug in GridCreateMosaic for stand-alone nests. Change-Id: I50b271be7fbfabc14a51f4cc848308c3d8143d70 commit 56de1e7b5c857da69a63fe9473f6e3a4f01e35a4 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Dec 15 18:41:50 2017 +0000 chgres_cube branch: This commit references #40471. Replace all remaining F77 netcdf functions with their F90 counterparts. Change-Id: Ieaea4b5485079b44d3c49e49556b2e2eba56b7f6 commit 23ece3b7d201be3c017d890576bc65c452e5810a Author: George Gayno <george.gayno@noaa.gov> Date: Fri Dec 15 16:02:32 2017 +0000 chgres_cube branch: This commit references #40471. Point (on Theia) to an updated ESMF v7.1.0bs39 library (was recompiled with -precise flag). Update read/write of atmospheric fields to use F90 versions of NetCDF functions. Change-Id: Iccd7b96a91b7d4d498847d00fec7679420852f87 commit 0eb38c145d8935b644ac014e65432a8e93f0f4fc Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 14 21:43:47 2017 +0000 chgres_cube branch: This commit references #40471. Update Cray build to use ESFM v7.1.0bs39. Change-Id: I5cc221fb2be80ddfc4e55cae183b64f671b97553 commit 7f6369774f00955df5543c8a61212f59a52c0373 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 14 21:16:02 2017 +0000 chgres_cube branch: This commit references #40471. Update ESMF error handling per Gerhard's suggestion. Change-Id: I29b882c178f6595f8d371d6bddb8b080a00f88d7 commit bb2bccc4832080366bf49d67a1dbaa63881bf189 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 13 21:00:39 2017 +0000 chgres_cube branch: This commit references #40471. Update to use v7.1.0bs39 of the ESMF library, which is only available on Theia currently. Change-Id: I4be45d0dc3e5c9646c6ff52d57b27639665c4b93 commit 1976a12346150a8a6093105089820637f4f5037c Merge: e362248 8585699 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 13 17:23:00 2017 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit e362248b338582f8c6f75e8ffacf328738a0a30c Author: George Gayno <george.gayno@noaa.gov> Date: Mon Nov 6 15:16:09 2017 +0000 This commit references #40471 Initial commit of the CHGRES cube-to_cube program to the chgres_cube branch. This initial version only processes surface and NSST fields. There are some hooks for processing the atmospheric fields. Change-Id: I33fa9e96637817dbe36e180e98b3b0c5e55b6945 commit 04f0e75 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Apr 12 20:18:54 2019 +0000 remove sourcing ~/.bash_profile in run_gfsmos_master.sh.dell. Otherwise the program crashes on Dell commit 1c4de6b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Apr 8 01:59:58 2019 +0000 for Issue#62220, update earc.sh to not overwrite enkfgdas_grp for the first cycle commit 71af83f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 3 19:38:51 2019 +0000 Merge GFS.v15.1.0 implementation branch q2fy19_nco to the master * Update model tag to nemsfv3gfs_beta_v1.0.18 to add restart capability of running GFS long forecast from the end or a failing point of last attempt. restart_interval_gfs is used to control the frequency of writing out restart ICs, which are saved under ROTDIR for emc parallels and NWGES for NCO production. exglobal_fcst_nemsfv3gfs.sh script has been modified to autimatically detect if the model should execute as a cold, or warm start, or as rerun. If it is a rerun, the script will look for saved ICs that is restart_interval_gfs hours back from the last ending point. * Correct a bug in precip units in the computation of frozen precipitation flag (srflag). * Write fields that are continuously accumulated in model integration in restart files so that after a restart their acummulated values can be read in. (FV3 Issue #61788) * Use 8x24 instead of 12x16 layout in config.fv3 for C768 * Address restart I/O issues #60879 * Update gsi tag to fv3da.v1.0.43 (Q3FY19 GDAS observation upgrade). * Merge NCO's changes to q2fy19_nco branch and then to the master. * Update GFS.v15 release notes. * Replace current ecflow/def file swith NCO's copies. Changes to be committed: renamed: docs/Release_Notes.gfs.v15.0.0.txt -> docs/Release_Notes.gfs.v15.1.0.txt renamed: docs/Release_Notes.gfs_downstream.v15.0.0.txt -> docs/Release_Notes.gfs_downstream.v15.1.0.txt renamed: ecflow/ecf/defs/prod00.def -> ecflow/ecf/defs/para00_gfs_FV3.def renamed: ecflow/ecf/defs/prod06.def -> ecflow/ecf/defs/para06_gfs_FV3.def renamed: ecflow/ecf/defs/prod12.def -> ecflow/ecf/defs/para12_gfs_FV3.def renamed: ecflow/ecf/defs/prod18.def -> ecflow/ecf/defs/para18_gfs_FV3.def new file: ecflow/ecf/defs/para00_gdas_FV3.def new file: ecflow/ecf/defs/para06_gdas_FV3.def new file: ecflow/ecf/defs/para12_gdas_FV3.def new file: ecflow/ecf/defs/para18_gdas_FV3.def modified: driver/product/run_JGFS_AWIPS_G2_dell.sh_00 modified: gempak/ush/gfs_meta_ak.sh modified: gempak/ush/gfs_meta_us.sh modified: jobs/JGFS_AWIPS_G2 modified: jobs/JGLOBAL_FORECAST modified: parm/config/config.base.nco.static modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.resources modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh commit 193f883 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Mar 12 20:32:47 2019 +0000 Vlab issue #59733. Add interface block for routine "write_fv3_data_netcdf" to the chgres.f90 driver. An interface block is required when optional arguments are used. This routine has one: NSST_OUTPUT. Squashed commit of the following: commit 43af677678427218bfc689450e2a8e893cb81cb2 Merge: 09406ee5 595d44c Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Mar 12 18:25:09 2019 +0000 chgres_wrterr branch: This commit references #59733. Merge branch 'master' into chgres_wrterr commit 09406ee5a6be3eb2e9b96e84f460b0b5b743f9bb Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Feb 5 21:39:25 2019 +0000 chgres_wrterr branch: This commit references #59733. Add interface block for routine "write_fv3_data_netcdf" to the chgres.f90 driver. Change-Id: Ic30af24b2c2704f1915ab93eeffbe0716a462e73 Change-Id: I19516cd1ad77aa62b3b311745ac63be139947fc2
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- add changes needed to run CCPP version of NEMSFV3GFS for GFDL MP or…
… GSDSuite (GF, MYNN, RUC LSM, Thompson MP) -- change compilation options in build_fv3.sh (assumes CCPP suites suite_FV3_GFS_v15.xml and suite_FV3GFS_GSD_v0.xml) -- change executable name to global_fvgfs_ccpp.x -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn -- add ccpp_suite variable to atmos_model_nml portion of namelist -- created new exglobal forecast scripts with namelist options -- define suite definition file (CCPP_SUITE) in config.fcst -- add new aeroic task to workflow for Thompson microphysics -- modify checkout.sh to add new directory, sorc/aeroconv (read README.md to extract files) -- change nstf_name in namelist from 2,0,0,0,0 to 2,1,1,0,5 (config.nsst settings)
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Commits on Jul 23, 2019
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- updated lsm=3 for RUC LSM in config.fcst_GSDsuite
- changed FHCYCLE=0 for RUC LSM in config.base.emc.dyn_GSDsuite
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VLab Issue #67188 - updated GSI checkout revision and turned on wafs …
…build for all machines
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- rename *GSDsuite files to original names (config.base.emc.dyn, conf…
…ig.fcst, exglobal_fcst_nemsfv3gfs.sh) - moved convective options from config.fcst to config.base - created separate _v15 files
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Merge branch 'develop' into gmtb_ccpp
d2f877f - Thu Nov 14 19:34:51 2019
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- temporary fix for fv3ic.sh for now to create FV3 ICs using FV3GFS nemsio files - moved convective options to config.fcst* files - updated links for diag and field tables for GSD - add CCPP executable to link_fv3gfs.sh
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merge in changes from develop branch
-- GFSv15.2.3 ncep_post tag update -- GFSv15.2.4 change
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for now, comment out top 2 lines in diag tables for GSD; otherwise, g…
…et invalid file format error
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- define satmedmf earlier in config.fcst for MYNN
- add new experiment setup scripts
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Merge branch 'develop' into gmtb_ccpp_hera
modified: jobs/JGFS_CYCLONE_TRACKER modified: jobs/rocoto/getic.sh modified: parm/config/config.resources modified: parm/config/config.vrfy modified: ush/syndat_qctropcy.sh
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- added aeroic task dependency for gfsfcst
- added new python script without aeroic task - updated testemc.sh to use python script without aeroic task
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- added changes for creating one config.fcst and config.base.emc.dyn …
…file (for now, still need to define CCPP_SUITE in config.base) - made config.base.nco.static executable - removed fcst and base.emc.dyn files for v15 - made aeroic.sh Korn shell script
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- make default CCPP suite GSD_v0
- define convective options based on CCPP_SUITE
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- new exglobal_fcst_nemsfv3gfs.sh script (merged from coupled_crow)
- moved module commands rom aeroic.sh to module_base.hera - copy namelist to output directory
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- added links for Thompson lookup tables
- corrected setting of gPDY and gcyc in forecast_predet.sh script
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Commits on Mar 31, 2020
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merge 26Mar20 develop branch into gmtb_ccpp_hera
Squashed commit of the following: commit 0e0dc87 Merge: b133700 95a6343 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request NOAA-EMC#42 from NOAA-EMC/hotfix/viewer Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit 95a6343 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer commit b133700 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue NOAA-EMC#21 - correct syntax for machine if-blocks in setup_expt scripts commit f4ee509 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue NOAA-EMC#21 - remove unneeded logic from partition check commit 4acc80f Merge: accb6f4 fb1c79f Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request NOAA-EMC#40 from NOAA-EMC/port2wcoss3p5 Issue NOAA-EMC#21 - Add support for WCOSS phase 3.5 commit fb1c79f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue NOAA-EMC#21 - updated WCOSS phase 3.5 queues commit 08a5354 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue NOAA-EMC#21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit accb6f4 Merge: 057b2a8 8b51b56 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request NOAA-EMC#39 from NOAA-EMC/feature/verif-tag Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub commit 057b2a8 Merge: 0377d20 622167d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request NOAA-EMC#29 from NOAA-EMC/feature/manage_externals Issue NOAA-EMC#3 - Introduce manage_externals as replacement for checkout.sh commit 622167d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue NOAA-EMC#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue NOAA-EMC#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue NOAA-EMC#3 - updated README with new manic version commit e602cd3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue NOAA-EMC#3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue NOAA-EMC#3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e6 Merge: f662fff 0377d20 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue NOAA-EMC#3 - Merge branch 'develop' into feature/manage_externals commit 0377d20 Merge: 1b359db 2552467 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 2552467 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue NOAA-EMC#8 - add switch for MET+ jobs commit 1b359db Merge: 0359d34 31bb7d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request NOAA-EMC#26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 31bb7d3 Merge: eb73e52 0359d34 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit f662fff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue NOAA-EMC#3 - Updated README with new manic tag v1.1.7 commit e3196a8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175 Merge: 4bd0e20 0359d34 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue NOAA-EMC#3 - sync merge with develop branch commit 0359d34 Merge: 1d9a1f0 bd00cb9 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request NOAA-EMC#19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit eb73e52 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue NOAA-EMC#4 - bug fix in getic.sh for v15 commit 1c85197 Merge: 67dae40 1d9a1f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f0 Merge: 3ed9267 bdbecaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request NOAA-EMC#18 from lgannoaa/exception_handling Exception handling commit 4bd0e20 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1ac Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue NOAA-EMC#3 - reduce hashes down to minimum 8 characters commit bdbecaa Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit b64fd5f Merge: cf00863 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf00863 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue NOAA-EMC#3 - remove copy of manage_externals under util and add README.md file commit c12e879 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue NOAA-EMC#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit 4d5713d Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit d0a3b53 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit 0ea809c Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit c0d7179 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e6907 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue NOAA-EMC#10 - mid-year update to bufr station list (develop) commit 1915aa9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue NOAA-EMC#8 - pulled in config.metp and modifications to two setup scripts commit 67dae40 Merge: f78eb1b 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:15:45 2020 +0000 Merge branch 'develop' into feature/remove_theia commit f78eb1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:13:08 2020 +0000 Issue NOAA-EMC#4 - removed references to Theia and Theia scripts commit 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 19:37:45 2020 +0000 Issue NOAA-EMC#7 - missed update to gdas transfer file from GFSv15.2.5 updates commit 3fd4bcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 17 19:12:28 2019 +0000 GitHub Issue #2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update commit 5307952 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Dec 11 20:47:44 2019 +0000 HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera
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Commits on Apr 10, 2020
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Merge branch 'feature/gfsv16b' into gmtb_ccpp_hera
Squashed commit of the following: commit 073e5f64eab5badbd8a30b2ea702ce27159186fe Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:44:14 2020 +0000 modified: arch.sh add external reference to VFRARCH. commit 53c818babc7c5e3dadc089823604b58bcb31bf0f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:30:04 2020 +0000 modified: arch.sh to clean old data under vrfyarch and touch remaining data to prevent them from being removed by the operation system commit 44dd4c28609d4e7c24cf87d5f69796ea8f7a6245 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Apr 9 12:00:15 2020 +0000 Issue #1: update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11 commit a8b655c0b543b1a3d94b7bb70130e58c2a747663 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:50:32 2020 +0000 modified: module_base.hera and module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08 commit 4c1acf26cac49b9dd26ad404c6547cea1a969b7f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:18:43 2020 +0000 modified: checkout.sh to point to model tag GFS.v16.0.2, which includes following updates https://github.com/ufs-community/ufs-weather-model/pull/100 * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90 * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time). * update esmf lib to esmf801bs08. commit 41b68b5b7257a6f5a3ee1c88f3b8d3251b8097a9 Merge: 556614f5 ad9dd289 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Tue Apr 7 00:15:44 2020 -0400 Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost Wave component workflow updates commit ad9dd28990f6ee6727f6dec43d335545c979093e Merge: 3b135fe9 556614f5 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Mon Apr 6 00:01:32 2020 +0000 Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1 commit 3b135fe9b6a2adfd337aa5c59188a3641ca68432 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Sun Apr 5 23:54:36 2020 +0000 Adding ROTDIR path for operationalnco envir commit 556614f596f1e3fdb0dca3affe320aaea3650b23 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Apr 4 00:40:20 2020 +0000 modified: sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil, background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for reducing surface cold biases. modified: parm/config/config.fcst, tunn on canopy heat storage for slm=1. commit 83c546b74d1c8fae22535082dec8cc03d8477ad7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 18:55:08 2020 +0000 Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls commit 551ae13fcaf35f86580707bba583bc3b825d796b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:52:01 2020 +0000 Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile commit 6c803647fb3c8c14e5da032b0f14add219d74cb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:39:34 2020 +0000 Updated KEEPDATA block and added exit 0 to wave j-jobs commit 42e08a505263aee0c990417487e7a62d37405d80 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:34:38 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit ddb1b953789b4253d70db9bceb2e9a2d5b6fcc43 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:33:12 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit 6c272f9e0cb13da7481431c60fc5f4c494d8fb87 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:06:29 2020 +0000 Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts. commit 6e1e023b2e2d547b3429bd66a724c735db542c74 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:26:18 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit d5d3701eb32f3a9052d2bb9944bb2a402cd95018 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:25:54 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit 84c8730053c930508bf4ca211b1440ce32f735a1 Merge: 8ef7dee8 49faf67f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:57:12 2020 +0000 Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost commit 8ef7dee8b60cf548b8c0fbe95a57d8a49845ac38 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:54:07 2020 +0000 Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs commit 4355153d85c4d9a553dc4838659005a791fe12d7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Apr 1 19:44:37 2020 +0000 adding hooks and parms for new wave model grids in several scripts. commit 49faf67fd401856923947972053395d351330ede Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Mar 30 14:32:42 2020 +0000 GitHub Issue #1 updated AWIPS parm cards with DZDT commit 84c28812d8d681c486132bb02cb9478055ec88b1 Merge: 7470bfe4 0e0dc873 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:50:36 2020 +0000 Issue #1: Merge branch 'develop' at 0e0dc87 into feature/gfsv16b commit 7470bfe459fcb28751800b525d9387fbc486b8e3 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:34:52 2020 +0000 Issue #1: maintenance and consistency updates * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0 * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF. PREFIX_ATMINC defaults to a blank string - no change in current behavior * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball commit 79b91dc2399609d806b99f0ed5271494d1bab6d0 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Mar 27 04:46:51 2020 +0000 Adding missing cd fv3gfs.fd back in checkout.sh commit 0e0dc873ceff26f9666fc40287ad2457171719c7 Merge: b133700a 95a63432 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request #42 from NOAA-EMC/hotfix/viewer Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit 95a63432f3fbdd8745d0617089485cdc332f57e7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit b133700a4a65fe5334e5b5522a8c6f83bf0bbd0c Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue #21 - correct syntax for machine if-blocks in setup_expt scripts commit c3fbe7970c03aaad8e5b511b9d43931da9382fd3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 26 12:05:46 2020 +0000 Adding new grids, changes to modulefiles for poiting to new esmf module commit f4ee5098988106037528650ba8a15922150b70af Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue #21 - remove unneeded logic from partition check commit 4acc80f6037a4d0fd43a64e9178e7aadbd6162f5 Merge: accb6f4b fb1c79f4 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request #40 from NOAA-EMC/port2wcoss3p5 Issue #21 - Add support for WCOSS phase 3.5 commit fb1c79f4b7136e09c9d35d9d05303116036f58c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue #21 - updated WCOSS phase 3.5 queues commit 08a535492952d863f860977f0ab0da4bc79bc931 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue #21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit be21d3f2bc06ef8e7e31edce08756ee6aee36d31 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 24 20:10:07 2020 +0000 Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing commit c4cc28b08ca58007882e9823a68f26c2c5eaf92b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Mar 24 17:22:55 2020 +0000 Fix wave config begin and end echos commit 20d79d274be862b7147f17cd7654f2c770ce7425 Merge: 3efe1c23 accb6f4b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 23 18:19:08 2020 +0000 Issue #1: Merge branch 'develop' accb6f4 into feature/gfsv16b commit accb6f4b919871221e8037d5f154b157d88d1102 Merge: 057b2a82 8b51b56f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request #39 from NOAA-EMC/feature/verif-tag Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56f84289d1c01863b61421b21eccd22939c Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 3efe1c23fbe906953f3df4e6e6b43a604505dcf1 Author: Fanglin Yang <Fanglin.Yang@noaa.gov> Date: Sun Mar 22 16:49:40 2020 +0000 update arch.sh to remove selected RESTART files commit 586d0994aab2348c1deea521b37183ddf0a8f2d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 19 14:01:16 2020 +0000 Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg commit f412f2ca8071baa6bd91f641c1fd8102e9271bef Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 19 13:53:34 2020 +0000 Issue #1: update EMC_verif-global to tag verif_global_v1.6.0 commit 94abe6a1caca4724fbc580d58928a6cf74a65590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 18 19:02:09 2020 +0000 Fix syntax error in setup_workflow_fcstonly.py commit 06ff92be074bac2728055a62ce0fa263a4d13cf6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:37 2020 +0000 modify job card for tests commit a2b76f1d402c8568612dc727ebf36b548748589d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:04 2020 +0000 modify namsnd TIMSTN commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:09:24 2020 +0000 modify collectives mpmd design commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:08:41 2020 +0000 modify config.resources for postsnd number of tasks commit e3945e03031db23dbb8681e3d1034cc07377ae2d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:38:07 2020 +0000 Issue #1: add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:35:14 2020 +0000 Issue #1: DA workflow updates for GFS v16 (does not change results) commit c728925aaf6f8c2aac170e6987ed34e28e411053 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 15 17:16:56 2020 +0000 Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts. commit 9bc784f708e09e9f5392c662cae2ed51cfb09011 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Mar 14 17:43:00 2020 +0000 Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS) commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:25:36 2020 +0000 Issue #1: update Externals.cfg to GFS v16 components commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8 Merge: 55130516 057b2a82 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:21:33 2020 +0000 Issue #1: Merge branch 'develop' at 057b2a8 into feature/gfsv16b commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c Merge: 0377d20f 622167d5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request #29 from NOAA-EMC/feature/manage_externals Issue #3 - Introduce manage_externals as replacement for checkout.sh commit 50649e274d2b074f4d3c6f18503b8bb6997a5bde Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Mar 11 03:16:10 2020 +0000 General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level commit 55130516cea5ea67b758b52c9445aca667e1c35a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 9 13:59:44 2020 +0000 Add ability to have wave jobs depending on cdump commit 622167d5fb3322921a1702639ebccb42da1f5e1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d50999f64ed5208d94a8cceb8179c9395f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue #3 - updated README with new manic version commit e602cd3d536b55b86b04285aedd5781d8d3a9f82 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue #3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f430d70cc516dea419a8969c6fd9fc0910 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e67810d21366d0e9af6d9937c29aa4965ad Merge: f662fffa 0377d20f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue #3 - Merge branch 'develop' into feature/manage_externals commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 14:05:29 2020 +0000 Issue #1 - remove gfswave restart archival commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:51:22 2020 +0000 Issue #1: update postsnd section of config.resources commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:40:38 2020 +0000 Issue #1: update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels * parm/config/config.anal - reduce second outer loop iteration count for gfs * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false) * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1 * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2) commit a107109d8fdd0292a3017f26e56863fbb28a63ce Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 16:08:23 2020 +0000 Fixed bug in config.fcst related to extra then commit 0de559a088ac670f2b105168988c18ee1b57488a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:55:50 2020 +0000 Issue #1: update exglobal_fcst_nemsfv3gfs.sh and checkout.sh * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer * sorc/checkout.sh - update to model tag GFS.v16.0.1 commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a Merge: fa7bca5a 0377d20f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:36:50 2020 +0000 Issue #1: Merge branch 'develop' at 0377d20 into feature/gfsv16b commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94 Merge: 1b359dbe 25524675 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request #28 from NOAA-EMC/feature/metplus2 Issue #8 - add switch for MET+ jobs commit 25524675a63e59829655bbd9a09abc4dca246357 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue #8 - add switch for MET+ jobs commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab Merge: af73a39f cd67f975 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:08:57 2020 -0500 Merge pull request #25 from NOAA-EMC/feature/wave2global Feature/wave2global into feature/gfsv16b commit cd67f97592227fea0238327dade887d4584300c3 Merge: c72d7b5b af73a39f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:03:10 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Mar 4 23:53:41 2020 -0500 Clean up exwave_post_sbs commit 2e738f20930dfd7d5216920ec7cc26774be811f3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 5 04:03:44 2020 +0000 Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. commit b7638436b1e737077fbb2dad705e7ed157df261e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 21:02:04 2020 +0000 Fix to JWAVE_PREP to look back a day for rtofs commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 19:59:56 2020 +0000 Adjustments after going through PR review commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0 Merge: 0359d342 31bb7d32 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request #26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 13:03:12 2020 +0000 Adjust restart_interval if-blocks for DOIAU=YES in configs commit 2b337a8f8c900146905915032826faf9e6f07dc0 Merge: a4daafee e0a1a0ae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:31:09 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit a4daafeecaf3fed38e637389ab5f4041b5139a4c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:30:58 2020 +0000 Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data commit af73a39fc8ae7868ea9d08081b98f84345fa4f95 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Mar 3 13:44:59 2020 +0000 Github Issue #1 Updated postsnd.sh commit e0a1a0aeb4066ab834fd93a86780196f55a7a447 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 18:45:50 2020 +0000 Fix gdasfcst dep on gldas commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129 Merge: 48ed4c5f 203d1747 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 13:41:13 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Mar 2 04:22:02 2020 +0000 General cleanup. wavepostsbs wall time limit matches gfsfcst walltime . commit 4af83a430a8bb58f83d686535d39d9745de9ab6c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 1 02:51:02 2020 +0000 Cleaning up prior to merging to gfsv16b commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d Merge: 4400d7c3 d39ba74d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:17 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:13 2020 +0000 Changes to feal with waveprep and wavepost commit 203d174798aae0d4e581930fa8f49abb8421f81f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Feb 29 01:17:57 2020 +0000 Issue #1: two GFS v16 DA updates * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0 * parm/config/config.anal - remove REALTIME=NO section since not needed commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 19:01:02 2020 +0000 Removed extra forward slashes in wave part of hpssarch_gen.sh commit 82889365da44196804b7d751a1c8c5992ca102ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 18:44:13 2020 +0000 Added waves to archival commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db Merge: 9321bdc9 8997f2a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:58:28 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:39:34 2020 +0000 Cleanup and added adjustments to other env files commit 8997f2a27a45ee018d33abdf1883914a38c88ffd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 27 14:37:24 2020 +0000 Issue #1: check existence of EnKF spread file before adding to HPSS archive list commit 2d6620e9b961f290daab1369778644c799bec5cc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:45:39 2020 +0000 rm nemsio utility commit 0120cf577df7faf2413e0b585423728ecd62657d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:40:45 2020 +0000 modify config.resources for postsnd ppn=4 commit 0891840f8f43dccdd81573f2d6513b573de921aa Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:32:07 2020 +0000 modify config.resources for postsnd ppn=4 commit 67e20de5ac6e8f52312bc71adc5419330ebe6542 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 04:22:36 2020 +0000 Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics. commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 03:47:36 2020 +0000 Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available. commit 7145fd01ffcf3043dd1dea458ae866f208f32633 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 19:34:24 2020 +0000 Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 18:44:45 2020 +0000 Fix for missing nth_postsnd in config.resources commit 91456a9b7cfc285b78ec083a419592fafe6f75d0 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 15:52:32 2020 +0000 modified config.resources for bufrsnd commit 011a393c162a422859b1184e9f32dd50d1d48882 Merge: d01c3543 8806c9e4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 26 13:50:49 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit d01c3543e59bbabb491454788f17e818305de6fc Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:48:26 2020 +0000 Updates to checkout.sh from feature/gfsv16b commit 8806c9e4e3572169146a2ba3605a86680e35287c Merge: e87695c8 318d8b46 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:45:13 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b Commit NetCDF parallel reading capability. commit 3b5d451aa165dc368c674cd2a71d6786097869e7 Merge: 88d8abda 318d8b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:43:52 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit e87695c8b151e3c64cafed97ad921849d3998ece Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:42:41 2020 +0000 reinstate nemsio utility files for namsio data format commit 318d8b46ff7269899db92ae72f68fa1110406a16 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Feb 25 20:17:40 2020 +0000 Issue #1: add gldas and esfc to the list of log files to write to HPSS commit 6102b6971fc9ee1f5dfc20c98a625b20e7f2cbbc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:32:21 2020 +0000 Adding a parallel reading interface commit c0b9ddc5dfe0d5dfcf1592fabf295ad951cc20b3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:31:19 2020 +0000 adding parallel reading interface commit 057b10cc02f66cdede531a04967a2d6a51efb148 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:30:16 2020 +0000 Clean up un-used variable commit 25ac8f0a64ea710e7b8dd55dd3d03cdfd600c671 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:28:59 2020 +0000 Modify to call parallel reading subroutine commit c1a25a5ec5d46d52cd931b5178abba45bfb41345 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:20:26 2020 +0000 parallelizing gfsbufr.f for reading NetCDF files commit b28020f0c03ce54db3022de43ecc0f7119bce6d2 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:17:32 2020 +0000 modify driver for parallel read test commit bce7d9642decf393e2b314e837f557765a6382b8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:14:45 2020 +0000 modify postsnd resource for parallel read commit f89912416cf5347fbcd6e1378aae61e99ffa14ac Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 18:59:26 2020 +0000 remove testing jobs script JGFS_POSTSND_netcdf commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b Merge: 33c65a19 9d6e8464 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 25 17:49:29 2020 +0000 Sync merge with feature/gfsv16b commit 9d6e8464aa207da41901278c9e5454efd9e475a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 25 04:45:44 2020 +0000 setup_workflow_fcstonly.py failed. Updated to get "reservation" from config.base. commit 36367563af24402db621179bda139f17d3ca1d44 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 24 20:37:27 2020 +0000 Issue #1: update config files for use in GFS v16 real-time and retrospective parallels commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4 Merge: 9a1f79d7 0aa8dacf Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Feb 24 15:37:48 2020 +0000 Bugfix for creating spectra files in wavepostsbs step commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde Merge: 8148766c 431c7866 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:57:55 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 8148766c489057553e20fc42bad494f1ed5aa70c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:56:56 2020 +0000 Small fix to exglobal_fcst_nemsfv3gfs.sh commit 431c78668c98268cb749397ec8218428104c9687 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 20 15:19:42 2020 +0000 Issue #1: remove RESERVATION from archive jobs commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 20 14:05:52 2020 +0000 Remove output_1st_tstep_rst override and add iau_drymassfixer commit 36cb42dc5d8985f8402405dce811f04063f572ab Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:30:28 2020 +0000 Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:19:11 2020 +0000 Adding back lost and found EOF in section that creates input.nml commit 635d95d58c932909dc6a29c62515c385dc01587a Merge: f31de5aa c4454b3a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:42:49 2020 +0000 Additional sync merge with feature/gfsv16b today commit f31de5aaa6c915ac8bc1184726bead71dc9157d4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:18:23 2020 +0000 Removing copies of exglobal_fcst that were added erroneously commit c4454b3ab2c5fbda7890546f31f2fe38daa5edd9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 19 16:41:38 2020 +0000 modified: sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib modified: scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true. commit 31bb7d32181ca84229c3c3374226bbd37784ddc4 Merge: eb73e520 0359d342 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 15:05:59 2020 +0000 Changes to config.resources after wave tests commit 24844e403745fb5b292fcde0aae53a3c497aa295 Merge: 0f2f2b0b c2e99795 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 14:03:58 2020 +0000 Sync merge with feature/gfsv16b commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 13:36:14 2020 +0000 Updates to config.wave and scripts/exwave_post_sbs.sh commit c2e997959144b2628185b58e5480f25a7cd8852a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 19 00:42:49 2020 +0000 Issue #1: add backup option to fit2obs, update config files * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs * parm/config/config.vrfy - add VBACKUP_FITS commit ed160c03ff53e10aa0e3d57ac802e8e6fecd54a3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 22:22:10 2020 +0000 modified: sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0 commit c08ebb8a2aca1061272c05643160aebc2a06eac5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:22:01 2020 +0000 modified: checkout.sh to use UPP: upp_gfsv16_release.v1.0.5 ufs-util: release/ops-gfsv16 commit a6bc7f8ad50a0c7400c17c3d1423e2aefccff2ed Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:12:17 2020 +0000 modified: arch.sh to archive gfs_pgrb2b group into HPSS commit 958ee38b6fb9c76056a3045f43dec92a503f48c9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 20:38:53 2020 +0000 Increasing resources for eupd when C384 commit db5c593f2c34111a13bddaa1f4f59edcd74c2118 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Feb 14 20:12:00 2020 +0000 Issue #1: update modulefiles/module_base.hera to crtm/2.3.0 commit f662fffa25a99617828e4322bf789978cf523248 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue #3 - Updated README with new manic tag v1.1.7 commit 94cd971fb14c4b7204822ca780d6e9dbe945b595 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:31:32 2020 +0000 Updates to wave scripts commit 4e006dc33fb68febaa33524dfafaa1f0d3282939 Merge: fcc5a74a a94a44a8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:50:00 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit fcc5a74a95d37ef2d7193ec6c0c8e5513a0f3548 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:48:44 2020 +0000 modified: config.fcst to fix a bug commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175d8a309010e421ccd54e6d6eb083af3579 Merge: 4bd0e203 0359d342 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue #3 - sync merge with develop branch commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 19:09:56 2020 +0000 Added EUPD_CYC variable to config.base.emc.dyn commit a94a44a82be752f6542b50c8d6ce082f7272dc4c Merge: 0f0894bf 0359d342 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 13 18:59:51 2020 +0000 Issue #1: Merge branch 'develop' at 0359d34 into feature/gfsv16b commit 0359d3425a8710e7b696b94456ec8e54e9a2fd9f Merge: 1d9a1f00 bd00cb98 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request #19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit 0f0894bfcc8a25ea921026d911a38e7b726ce638 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Feb 13 14:15:16 2020 +0000 GitHub Issue #1 removed script exnawips.sh.ecf (not used) commit adabbaf95b32b7292cc0f09447f98773795f2b1e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:34:02 2020 +0000 change netcdf modules commit 767b9c33e29aff3470d914edb9289ef8236331ed Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:32:25 2020 +0000 remove hardwired libs commit be3c324dc1e35f336b1df6f2be8ab335f45f1b9e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:31:13 2020 +0000 Modified modules for parallel_netcdf commit 3e3c119d096f5d03082183655d0f5db4e4991951 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:29:53 2020 +0000 Added netcdf_parallel modules commit 0b25f5b648892a068ac6ae1c30890729576b2c5c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 20:28:27 2020 +0000 Changes to be committed: deleted: ../driver/product/driver_WAFS.README deleted: ../scripts/exgfs_grib_wafs.sh.ecf deleted: mkwfsgbl.sh commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 18:00:14 2020 +0000 Adjusting config.resources for C384 commit 8bdf2387b1fad22cfa2da37a7428406a847d2362 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 17:33:53 2020 +0000 Reducing npe_eobs from 400 to 100 commit 648479c086776b0c7b4d24b4052130d48dfaa64a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 12 15:56:39 2020 +0000 Issue #1: add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3 commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 14:46:26 2020 +0000 Removing gefs from checkout.sh and link_fv3gfs.sh commit fc0b624223baa54315e7ad52f48b689fff29bccb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 02:37:36 2020 +0000 modified: exglobal_fcst_nemsfv3gfs.sh -- bug fix commit 97e34f9728ae3bda52fe636994c91453b5cccfb4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:47:34 2020 +0000 removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh JCAP_STP=${JCAP_STP:-$JCAP_CASE} LONB_STP=${LONB_STP:-$LONB_CASE} LATB_STP=${LATB_STP:-$LATB_CASE} commit 60098fc7238b35f461ec9aa8fabd924fb09372ce Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:34:40 2020 +0000 1. modified: parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made by the physics group. More development is required to use the canopy heat storage parameterization. 2. modified: scripts/exglobal_fcst_nemsfv3gfs.sh to 1) change the default of lheatstrg to ".false." 2) for ensemble forecast, change &nam_stochy ntrunc = $JCAP_STP lon_s = $LONB_STP lat_s = $LATB_STP EOF to &nam_stochy / EOF Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on, I recommend removing ntrunc, lat_s, and lon_s from the namelist. I have fixed the bug that forced the spectral resolution of the random patterns to be related to the number of mpi tasks. Now the code calculates the appropriate truncation for a given length scale. It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same. commit ababd08e676f45524ec616e60a0290c26d3b1795 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Feb 11 16:28:12 2020 +0000 Updated data card grib2_awpgfs102.003 commit eef10607bedf12153580d85d5a7952ea90c8b198 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 16:14:29 2020 +0000 resort back to older w3emc lib since w3emc_para does not support mersenne_twister modified: modulefiles/gfs_bufr.hera modified: modulefiles/gfs_bufr.wcoss_dell_p3 commit 8fe97ac689aebb2243b6e69cbf7015e636d68852 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 15:45:33 2020 +0000 modified: modulefiles/gfs_bufr.hera and modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules commit 78a7294eb1937758fa81f72cc5045d3d680a07c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:29:15 2020 +0000 Fixed missing fi in checkout.sh commit 15628bda0621187949204d0d9af4d901e205495d Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:21:39 2020 +0000 Change fv3gfs checkout to develop branch of ufs-weather-model commit 631820beca07522faedccc47d7415c4b6b250273 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:08:30 2020 +0000 Changing checkout.sh to Henrique's fork branch gfsv16_wave commit cc742b672af73931999bddf115bc32f07ed69f87 Merge: ba63c4f8 1d9a1f00 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 10 17:19:58 2020 +0000 Issue #1: Merge branch 'develop' at commit:1d9a1f0 into feature/gfsv16b commit a518485866536102312c477926ae42a59d5e561e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 17:02:22 2020 +0000 Changing fv3gfs.fd checkout back to gfsv16_updates commit c75d35b6802592b17640fecace38d9103a14b1bc Merge: 2a46ee2e ba63c4f8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 16:44:53 2020 +0000 Sync merge with feature/gfsv16b commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 15:42:35 2020 +0000 Updates for wave and fcst scripts, as well as config.wave commit ba63c4f83955bfc38bc3f2fbd9f8c6447630a803 Merge: fc2144e6 75a9fb5d Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Sat Feb 8 20:35:14 2020 -0500 Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf Feature/gfsv16b paranetcdf commit 75a9fb5d4dd6d4ef91bdee93769031465ddd57e9 Merge: a2932c5b 6f256b4f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:22:29 2020 +0000 Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf commit a2932c5be934fb45416c92caa01f0fa3df4829d1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:21:52 2020 +0000 modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.nco.static commit 6f256b4f7aadb9913cd78962e19dcabcf7ba49e4 Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Feb 7 20:07:24 2020 +0000 Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file commit eb0681751af6b850e99c880c11343af10000d54d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 16:20:43 2020 +0000 modified: sorc/checkout.sh update ufs_util repo commit b9feca17a5e566d75995049ba8e1497eb205b96d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 15:03:52 2020 +0000 modified: ../../modulefiles/module_base.hera modified: config.anal control ABI and AHI data usage modified: config.resources updates based on pull reviews modified: ../../sorc/gaussian_sfcanl.fd/makefile.sh use parallel netcdf commit eb73e520716215c3f11cc4cdfce3831408221766 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9812c5fb400ba4399d183b2198b8e80372 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue #4 - bug fix in getic.sh for v15 commit 1c85197d7a1beb34f2e3a52969d631d42003e6eb Merge: 67dae409 1d9a1f00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f00b73cb3852d352e9a41a15651a99fb656 Merge: 3ed9267b bdbecaa7 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request #18 from lgannoaa/exception_handling Exception handling commit 85deaf78b86184f9b52afe5d68b370ba640c152b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 19:16:18 2020 +0000 Updated resource configs based on C384 and C768 tests commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue #3 - reduce hashes down to minimum 8 characters commit 92d07793ce4be5ac1e12aedb536ace89ec6fcc7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:28:15 2020 +0000 Update to use parallel netcdf libs modified: modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3 modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3 modified: modulefiles/fv3gfs/gaussian_sfcanl.hera modified: modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3 commit a6a28943d08089d96dcf3ea7953ffaf9877e3caa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:10:40 2020 +0000 Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and w3emc_para 2.4.0 on Dell and Hera commit cf1c0a5cfec92cebaf648a09f42da435750154b6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 6 13:43:17 2020 +0000 Issue #16: Update EMC_verif-global to tag verif_global_v1.5.0 commit 41ca86bc4001549b98d6b6594288c9752215a1f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 04:19:11 2020 +0000 modified: parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf commit 61b72ba02f920b4817ee199d9cae685e2e3c2234 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 01:10:06 2020 +0000 modified: config.resources commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 4 19:11:42 2020 +0000 Wave changes for running with IAU on commit 3c0ebdde3307741f88e6ecef4f59faaf5efdd5ad Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 4 17:11:56 2020 +0000 modified: modulefiles/module_base.hera and modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib modified: parm/config/config.efcs and parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts commit f89bafe55aa0b15ae306dbaff8d97cbd17dc27c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 3 14:09:33 2020 +0000 Issue #16: update DA checkout to feature/parallel_ncio commit bad2fc1a43a4df12f3f57c4da9e7612402885cd4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 05:01:43 2020 +0000 modified: parm/config/config.fcst modified: parm/config/config.fv3 commit 183aac6be0ff71d8368ee139695aeca7caf72464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 04:10:36 2020 +0000 Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in the config files of in v16rt2. Made ertain adjustment and cleaned up certain parameters in a few scripts to remove redundance. modified: parm/config/config.anal modified: parm/config/config.base.emc.dyn modified: parm/config/config.efcs modified: parm/config/config.eobs modified: parm/config/config.eupd modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.gldas modified: parm/config/config.post modified: parm/config/config.resources commit 9d5e0a0348ae7b825629bc4c601b8ee8e726418d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 19:04:59 2020 +0000 Github Issue #16 1. add options to workflow scripts to use parallel netcdf for I/O. The application varies with model resolution and computing platform. See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings. 2. Update UPP to upp_gfsv16_release.v1.0.1 modified: modulefiles/module_base.hera modified: modulefiles/module_base.wcoss_dell_p3 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh deleted: parm/config/config.resources.C96 commit 3a66788620477dd3159fe9633a860c799f421eee Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 05:17:40 2020 +0000 The following files are no longer used deleted: README.iau deleted: config.anal.iau deleted: config.base.emc.dyn.iau deleted: config.efcs.iau deleted: config.eobs.iau deleted: config.eupd.iau deleted: config.vrfy.iau commit fc2144e64bedc1f7fc7bd302e42baa94bfe06e7f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:09:00 2020 +0000 issue #15 Remove station height adjustment commit 72cb96233fb636b83ca9f339e23955629c97b82d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:20 2020 +0000 issue #15 Porting bufrsnd to Hera commit 0799ecd1922652d3d17e88dae62fea1c6d8a96e3 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:02 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit a0ac43a8f1541ae47f156442a303689e5d74a9ec Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:07:34 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit 85dc2f2486f841e7ad4785e5170c2edd2fbba35e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:04:28 2020 +0000 issue #15 Porting bufrsnd to Hera commit 26d52df758693bde55b047bfb874df4439c6d57a Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:03:20 2020 +0000 issue #15 Modofy driver for test runs commit 0e34bc5f4d38d742a11e3275ee560708c417c37f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 14:53:37 2020 +0000 port v16b bufrsnf to Hera commit 87d3d18c291af5543de72e38e8dfe310223e1e1e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jan 31 03:53:20 2020 +0000 modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian commit 50b70215096dbc87e0484ed0eea9572238c37432 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 30 14:55:48 2020 +0000 Resource adjustments and fix for restart copying in exglobal commit bdbecaa7220f2462cc75e802570845809ebcfc75 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit 85b254d8e65318adaeef87ae7187218de59f94c5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 21:18:35 2020 +0000 Adjusting resources for wave component commit 3f858be34da7134a071762376f4c4e69ea73f4a0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:43:02 2020 +0000 Further adjustment to config.efcs for restart_interval for cold start SDATE commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b Merge: 9944f2fe 3fda3e35 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:26:10 2020 +0000 Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global commit 9944f2fe15576f0b401996fefe3c910888708e0d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:25:59 2020 +0000 Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c Merge: cf008631 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf0086311daaf62ee33df010946d0a0ddc5bc400 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue #3 - remove copy of manage_externals under util and add README.md file commit 3fda3e359f66611c77a97ca9c30a6204a36077c3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 14:18:47 2020 +0000 Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3 commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c Merge: 99b19f18 b3d88593 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:58:16 2020 +0000 Sync merge with feature/gfsv16b commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:54:46 2020 +0000 Disabling additional wave jobs for later implementation commit c12e87987113fa6f4b543bc0dae61d4259703c03 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit b3d885930adfc07c67bc8fbe146533868f96aba8 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 27 17:54:31 2020 +0000 Issue #1: update gldas workflow dependency to improve parallel throughput commit e216205aec6f481b4e96c8707d485dd2eacfb0e7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jan 27 00:01:14 2020 +0000 Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model commit 4db98e694624b62e45417b3bb6c7c771f633cb42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 17:18:14 2020 +0000 Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1 commit 4d5713d3983c6cc6a8e497e892760752e09f15a0 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f3cd5d858615f3f74dec78891a2189ee79 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit 7d0f783a41d8f1c50e9251b54884410e0bb7ad1a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 14:41:02 2020 +0000 Issue #1 - GFS v16 updates for MOS, checkout, and archive * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos * sorc/checkout.sh - check out new fv3gfs branch and UPP tag * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs commit d0a3b53c8117676c351c50287d4583951c94d42c Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9 Merge: bc07de02 09e68b48 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 20:00:34 2020 +0000 Sync merge with feature/gfsv16b commit bc07de02af5743194cb9203d0d36e62e9a25b223 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 19:43:12 2020 +0000 Fixed wavepostsbs dependencies commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 15:04:20 2020 +0000 Turn off cplwav in efcs config and adjusted dependencies for fcst job commit 0ea809c208ce606c957eed4d346a3828d8186010 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit b886c848a60871a86bb0b45d024a34368ad1d898 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 22 21:01:34 2020 +0000 Change to base config and update to wave dependencies commit 154b118a7808bfa60abe0620e4bee21cb4faabee Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 22 03:37:24 2020 +0000 Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug. commit 0edcb211586f1f96d01f172215568fa7eee3a7a2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 21 20:15:14 2020 +0000 Several changes to change the sirectory name from to etc. Updates to wavepostsbs. commit c0d7179f34837e40db9ccb1b941ad9f312283a6e Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e690717d72c7b021c637270108f4bacfb6816d Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79f3f9052377ff863da1bbac482548ee0ce Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156670bd810561bd2a699648afb946511ea9 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 09e68b4834b0b54552ef0ae3829a41063200fe5f Merge: a49e4e54 3ed9267b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 20 22:05:53 2020 +0000 GitHub Issue #1 Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 17 17:29:09 2020 +0000 ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py commit 80f13fb4b785fbde8e925cfb6deb547297f34e70 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:29:35 2020 +0000 Removing underscore from COM wave directory names commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:08:41 2020 +0000 Changing back waveprep to include ice and currents by default commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jan 16 19:43:26 2020 +0000 Updating post sbs script to copy station files to correct directory. commit a49e4e5403b1e16025b2a5890cef3de22627119a Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Jan 16 14:59:08 2020 +0000 Added build script for gfs_util commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:48:11 2020 +0000 Adding block sourcing config files into wave j-jobs commit b736f8315497bfc29fd77faa9d98bf558ddea919 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:40:16 2020 +0000 Removed config sourcing from rocoto job scripts commit 4f6840b25d85152ea7393a8959619bb4caab9d67 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:38:41 2020 +0000 Removing dependency on log file for wave post sbs commit 429c409799f1999babbfb3653e6f03be66f8fec3 Merge: 3f685fd3 a6905174 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:35:24 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 3f685fd3423add0ba2cfb7c3115a674891c44e55 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:29:58 2020 +0000 Reinstating Ratkos NO NO in build_fv3.sh commit 8f48844906f851a41db742f7686f7e7cae6b95c0 Merge: 5eeaffa1 7c595189 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit a69051742c5edd0e4d34d178329fc24cacede78a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:12:20 2020 +0000 Adding supplemental config source to JGLOBAL_FORECAST for wave commit 5eeaffa1c3f4e35fe067b7e229f16f93574bcb86 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:08 2020 +0000 Updated GFS drivers commit 7c595189e8c671a7b2eb6363d82020fb9ed58c13 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:09:54 2020 +0000 Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK commit 1f5c593705df384608b1f1dd84df9114d5d8a812 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:59:27 2020 +0000 Removing KEEPDATA from JWAVE_POST_SBS commit 5d2f2a21947dfb00762b1085fd267ca959b7fea6 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 19:50:00 2020 +0000 Github Issue #1 modified rocoto gempak.sh commit baa06afcecef64faad51bfac3b4fd2c064df3fb5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:32:06 2020 +0000 Changes to update sbs post and reconciling parameters for output post data. commit 8d430ceeac22bb8943bdf2052b85cccc9b621440 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 16:28:13 2020 +0000 GitHub Issue #1 Updated ush,gempak,jobs and docs commit 53f719f63f569bd061bd3cfd3b63d5040a962dea Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:19:46 2020 +0000 GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f commit 8b94a2d6caad3bc5eebfe69bffc5224bebd1856a Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:15:16 2020 +0000 GitHub Issues #1 Updated some gfs driver commit ed2317a953992974dc2e61517cfe3d22d3c2d75f Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 05:10:51 2020 +0000 Updated GFS driver commit 3ed9267b2f540694e957ee33a746f00857a5a1a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue #10 - mid-year update to bufr station list (develop) commit f59fc0c4550a5e8617fb70ca150e91a65de89e18 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Mon Jan 13 20:03:34 2020 +0000 GitHub Issue#1 Revert parm card for AWIPS grid 211 commit 21feab285859881814509d75c794bc4ae4f74a3b Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 22:00:38 2020 +0000 GitHub Issue #1 Updated AWIPS grid 211 commit e292d96010dc1e63f28d2c9d95c5e61776abe0dd Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 21:12:36 2020 +0000 GitHub Issue Updated AWIPS parm card grid#211 commit fcf2d09159f80142364fad616661014e434b2a89 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:57 2020 +0000 modify gfs_bufr.sh for generalization commit 528cde1998fa6b341794f4ad15820e8cbc517568 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:05 2020 +0000 modify exgfs_postsnd.sh.ecf commit 0b5a056b7c089e428806ceecb36ae0ddd0535060 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:40:21 2020 +0000 Addd 25 bufr stations and all station j,i commit 349c299740b5e1d022faa2d17aa6aa05ed8d7165 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:36:57 2020 +0000 add module nemsio/…
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- added sorc/aeroconv.fd to Externals.cfg file
- added script to extract INPUT/ and thirdparty/ sub-directories under aeroconv.fd
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- updated GSI tag in Externals.cfg
- added CCPP_SUITE, HPSS_PROJECT, ATARDIR to setup_expt* python scripts and config.base.emc.dyn - changed path for Thompson lookup tables from $FV3INP to $FIX_AM - add _jkh directories for gsi.fd and fv3gfs.fd with changed files needed for running cycling with Thompson MicroPhysics and reading Thompson lookup tables with threads>1 - added GSD-specific experiment setup python scripts
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- backed out adding CCPP_SUITE, ATARDIR, and HPSS_PROJECT to setup_ex…
…pt* scripts - added setting of variables in config.base.emc.dyn - removed config.base_emc and config.base_gsd from repository
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-- set DA diag table to diag_table_da_gsd when running GSD_v0 or GSD_…
…noah suites -- set radiation and LSM values differently for GSD_v0 and GSD_noah suites
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Merged with 26Jun feature/gfsv16b branch
Corrected setting of nwat for Thompson MP in config.fcst Squashed commit of the following: commit 28b1faf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a930 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c36 Merge: 99277ae 1e56edd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request NOAA-EMC#93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56edd Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ec Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885 Merge: 968b986 bf5a5c4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request NOAA-EMC#83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c4 Merge: b27a01d 968b986 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b986 Merge: 9b36cfd dc512dd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd Merge: a7b25a3 987c32a Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request NOAA-EMC#82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32a Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee67 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba89548 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e25 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29 Merge: 49abb90 e87b5a1 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb90 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a1 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d7131 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd821 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a133 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2 commit 4291349 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue May 12 03:05:17 2020 +0000 modified: checkout.sh to check out gldas_gfsv16_release.v1.2.0. commit 0c0614c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 8 18:29:07 2020 +0000 Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources commit a601acd Author: emc.glopara <emc.glopara@noaa.gov> Date: Fri May 8 04:17:27 2020 +0000 updated config.vrfy to point to the fit2obs version that supports reading netcdf history files export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun" export PREPQFITSH="$fitdir/subfits_hera_slurm" commit ad86a55 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed May 6 15:28:49 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1 commit 20572b5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 1 19:08:23 2020 +0000 Issue #1: update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates commit 20baab7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 29 18:49:05 2020 +0000 modified: checkout.sh to check out model tag GFS.v16.0.3 In Sfc_diff.f, a bug was introduced when the surface layer scheme was updated last time to reduce 2-m temperature cold biases. The bug only has impact over sea-ice points, where momentum and thermal roughness are nevertheless very small. commit af63464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 28 18:18:44 2020 +0000 modified: qctropcy.f by Qingfu Liu A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also NOAA-EMC#63
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Commits on Jun 29, 2020
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revert paths for HOMEobsproc_prep and HOMEobsproc_network since updat…
…ed paths do not exist on hera export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16/obsproc_prep.iss70457.netcdfhistory_new" export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16/obsproc_global.iss71402.supportGFSv16" (do not exist on hera) export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16b/obsproc_prep.iss70457.netcdfhistory" export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16b/obsproc_global.iss71402.supportGFSv16"
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Commits on Aug 7, 2020
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moved 4D variables to gfs_dyn ( refl_10cm,nwfa,nifa,qc_bl,cldfra_bl,el_pbl,qke )
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Commits on Sep 23, 2020
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As requested from management, point ufs-weather-model to development:
b8c5c22 git submodule f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03) 6bc61df FV3 (heads/develop) 9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop) 96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8) ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics (ufs-v1.0.0-70-gffdd19b) Remove aerosol from checkout
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Commits on Sep 24, 2020
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modifications to python scripts
remove aeroic task from setup_workflow_fcstonly.py delete setup_workflow_fcstonly_noaeroic.py add setup_workflow_fcstonly_aeroic.py
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Commits on Sep 30, 2020
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- updated to use 28Sep develop ufs-weather-model, d021e7b
f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03) 9e1ba7c FV3 (heads/develop) 9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop) 96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8) ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics (ufs-v1.0.0-70-gffdd19b) - changed compilation options in build_fv3.sh - removed fv3gfs.fd_jkh directory since changes are already in develop branch - updated getic script to retrieve files after 00Z 26Feb20 from mass store with prefix name of 'com'
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Commits on Oct 13, 2020
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Commits on Oct 22, 2020
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Cycled warm start run using develop ufs-weather-model branch and feat…
…ure/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison.
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Commits on Nov 12, 2020
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As of 11/12/2020, this package is tested with a C768 cycled (6 cycle)…
… run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration.
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modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py
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Commits on Nov 13, 2020
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modified: parm/config/config.base.emc.dyn
parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics
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modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh
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modified: ../scripts/exglobal_forecast.sh
modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD
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Modified build_all.sh checkout.sh partial_build.sh to allow switch tu…
…rn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh
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Commits on Nov 15, 2020
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modified: exglobal_forecast.sh to add
min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"}
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Commits on Nov 16, 2020
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modified: ../parm/config/config.fcst and exglobal_forecast.sh
1. use iovr for model after NCAR/ccpp-physics#514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option
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Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp
Pull in the iovr=3 in config.fcst
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while getopts "oc" option to while getopts "c" option
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Merge pull request #1 from KateFriedman-NOAA/ccpp
Fix missing COMROOT setting for Orion
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Commits on Nov 17, 2020
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Merge pull request #2 from KateFriedman-NOAA/ccpp
Adjust efcs walltime and eupd thread value on Orion
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