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Feature/ccpp #186

Merged
merged 103 commits into from
Nov 17, 2020
Merged

Feature/ccpp #186

merged 103 commits into from
Nov 17, 2020

Commits on Mar 5, 2019

  1. * create branch for GMTB from 05Mar2019 global-workflow master, 595d44c 

    * add changes needed to run CCPP version of NEMSFV3GFS
  -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn
  -- define suite definition file (CCPP_SUITE) in config.fcst
  -- copy suite definition file to run directory
  -- add ccpp_suite variable to atmos_model_nml portion of namelist
NOTE:  this assumes sorc/fv3gfs.fd is pointing to the CCPP version of NEMSFV3GFS
    @jkhender
    jkhender committed Mar 5, 2019
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Commits on Jul 22, 2019

  1. update to 19Jul2019 develop branch 

    Squashed commit of the following:

commit f0c7afe
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jul 16 18:23:31 2019 +0000

    VLab Issues #66082 - GFSv15.1.2 nwprod changes

commit 1652d22
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 8 17:22:26 2019 +0000

    VLab Issue #65754 - merge final GFSv15.1.1 into master

commit 6ca5556
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 11 13:24:26 2019 +0000

    VLab Issue #64845 - update UFS_utils to v1.0.0 tag

commit ad03fe5
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 10 16:00:47 2019 +0000

    VLab issue #64274 - missing ozinfo files in checkout.sh added

commit 18341fc
Author: Lin.Gan <lin.gan@noaa.gov>
Date:   Fri Jun 7 14:20:35 2019 +0000

    Patch missing lowres fix file, disable vrfy jobs from first helf cycle  and clean up extra files

commit d919db6
Author: lin.gan <lin.gan@noaa.gov>
Date:   Wed May 22 14:33:59 2019 +0000

    VLab Issue #64141 Merge ufs_utils into master

commit 2acb5d3
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed May 15 15:42:03 2019 +0000

    VLab Issue #58894 - SLURM updates for free-forecast mode

commit 475967b
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Fri May 10 19:36:13 2019 +0000

    VLab Issue #58894 - changes for SLURM on R&D machines

commit 8619f47
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Apr 23 19:29:54 2019 +0000

    update link_fv3gfs.sh to add correct directory paths for making soft links of post and wafs source directories

commit 839a816
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Apr 22 21:45:54 2019 +0000

    script update per NCO's request; add track files to archive list

commit 8250561
Merge: a1af4f8 0749708
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Apr 17 00:01:27 2019 -0400

    Merge branch 'master' of gerrit:global-workflow

commit a1af4f8
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Apr 17 00:00:51 2019 -0400

    redefine SIGLEVEL in ush/global_chgres_driver.sh to allow it to be sent in from parent driver script

commit 0749708
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Tue Apr 16 20:01:29 2019 +0000

    Vlab issue #40471.

    Add new parallel version of chgres based on ESMF
    regridding.  Contains the same surface pressure
    adjustment, vertical interpolation and surface
    initialization as the serial version of chgres.
    Can ingest tiled FV3 data, FV3 nemsio data,
    GFS nemsio data, GFS sigio/sfcio data.

    Squashed commit of the following:

    commit c656e6279e2c5d715f3403f47a8be3398e3932a7
    Merge: b400492 04f0e75
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Apr 16 19:57:42 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit b400492d4910154a60e73d681b920956502b6a2e
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Apr 16 19:56:51 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Move chgres_cube program to the sorc directory under
        chgres_cube.fd.

        Change-Id: I49f02aca17e79d262fd353f66293f3ebe4644b8b

    commit cc1c409c2aae9347546e15e1b40b0af1ed6ab61f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Apr 3 13:30:46 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Add threads to routine VINTG.

        Add OMP_STACKSIZE variable to Cray run script.

        Change-Id: Ibb3d10256d367c7a4520b0feeeba0e9d1a207141

    commit 8fe3c48409c437be71f4fb4bd87e0b09f70c53b5
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Apr 2 17:37:18 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Fix bug in search routine by checking original field (stored in
        field_save) instead of the adjusted field.

        Add sea ice default logic from original serial version of
        chgres.

        Both updates change results.

        Add threading to search routine.

        Change-Id: I46278241828a9020851530594d75e3362712353f

    commit 0ba7dcff2c14128a0792c30a5585a3d5da0754f5
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Mar 7 18:42:25 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Update Theia config files and run scripts for new paths.

        Change-Id: Ic244b4eabff9ac5c4ebe6e23f6e7845af65799e2

    commit ccc1c1e541d27c4334f57ce731c92009b25fefb3
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Mar 7 18:35:05 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Add new Theia config file for running with spectral
        gfs sigio/sfcio files.

        Change-Id: Ice67f73de40b82943ed6469f7a4f7f7477d669ff

    commit 614113255549be1c9abfc6acc5e8e0cb04dd1201
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Mar 7 14:40:12 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Updates for compiling and running on Cray.

        Remove compilation option for WCOSS phase 1/2.  Machine will
        be retired this year.

        Change-Id: I7a9d2c0e5c6e6b63908798eda829c443f80c1648

    commit 3e02203853376d1f0504ad618934b8c0adebc660
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Mar 6 21:31:08 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Update paths in Dell config files.

        Change-Id: I6b82400ec53cdce2602c08a59059848b9adc8dd4

    commit 595919780c34ae1f0798b62131be37cab26204ea
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Mar 6 16:33:01 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Numerous updates so program can ingest/process spectral gfs
        data in the 'old' sigio/sfcio format.

        Correct units error when reading snow depth from fv3 tiled warm
        restart files and fv3 tiled history files.  Program expects
        snow depth in millimeters.

        Change-Id: I332468857c20e48c645b038469db3848fafd3a37

    commit 778af6b5eae7c728dd4598736bf88ac43f98cddd
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Feb 20 13:26:21 2019 +0000

        Revert "chgres_cube for warm restart"

        This reverts commit 00c978c1c119850ec7de6d4dcc3426567717ecea.

    commit 2f920bd440216524adc211b1850784b6ab0293ee
    Merge: 257f8aa 00c978c
    Author: Scott <scott.gregory@noaa.gov>
    Date:   Tue Feb 19 20:51:52 2019 +0000

        Merge branch 'chgres_cube_warm_restart' into chgres_cube

    commit 00c978c1c119850ec7de6d4dcc3426567717ecea
    Author: Scott <scott.gregory@noaa.gov>
    Date:   Tue Feb 19 20:49:39 2019 +0000

        chgres_cube for warm restart

    commit 257f8aa7e6386f860db5d74697fbd9daf0e2e67f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Feb 13 15:56:14 2019 +0000

        chgres_cube branch:  This commit references #40471.

        When using fv3 global gaussian nemsio files, convert snow depth
        to millimeters and roughness length to centimeters to be
        consistent with the fv3 tiled history and restart files.

        Change-Id: I721f8fd38f0dbe528883af1cd3d62808345930d0

    commit d8256f42759b509a05e685cb81dfdba73eb0d939
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Feb 13 15:09:58 2019 +0000

        chgres_cube branch:  This commit references #40471.

        New option to process spectral gfs gaussian nemsio files.

        Change-Id: Ie387df4daa40c770d6adbd2fcc46e8ada3889d49

    commit 65e5949113e79c9c875ffcce3d9b8e6f3038dc26
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Mon Feb 11 18:51:47 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Add script for running on Theia using slurm.

        Change-Id: I66ed45f8389cd4887db763317186c773aaba95e4

    commit 448d6bd1b9378bfd9d01e59db6df38913d1ab1c9
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Feb 8 20:02:43 2019 +0000

        chgres_cube branch:  This commit references #40471.

        static_data.F90 - Updates for new gridgen_sfc file naming
        convention.

        Change-Id: I386f9a0f7ae2bc443634420b64abd8a7017d1b27

    commit 0d76a9d7c1c3dfda78c5e4269407dab08a0ec697
    Merge: ba27618 cc32f99
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Jan 25 19:15:35 2019 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit ba276186b9113cb0e3adbe71475300c4c1738d9a
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Nov 16 22:08:02 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update theia config files for tracers.

        Change-Id: Ibcafbc82dc4c6fff58b56cfa163d101abd66cdb5

    commit bc7b201febc3613f0c4e5c394f54117147b0f768
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Nov 16 21:14:25 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update Dell config files to include tracers.

        Change-Id: Ie30bb81dd10811e16d39e9e919b1c32590e20b8e

    commit 3375b682269240d05ede7c568d12ac5e13d2d4a3
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Nov 16 19:39:47 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add namelist option for users to select which tracers to
        process.  Update cray config files accordingly.

        Change-Id: Ibeffdb44ab550ab3f5514bca2153a35bb5dc9051

    commit d9d4408e4949871de57a4b956312b55c64c1afd7
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Nov 16 18:10:56 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Numerous updates so the program can process a user-selected
        set of tracers at run time.

        Change-Id: I8679b5a327f457fb745927dfc7ca11926a2258ce

    commit 9b9c92d87aec005c23d22a1b416cf86d3bd9d297
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Tue Oct 30 17:43:16 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Minor fix to two error messages.

        Change-Id: I423986d9ab7f62c4da79850d3352c5f0b2190fb2

    commit 0b889ad6328ef0beb7a83feb57563e8e9856b895
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Tue Oct 30 12:26:30 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Remove hardwired atm/surface files names in routine
        "define_input_grid_gaussian".  Improve error handling
        in that routine.

        Change-Id: I18d894792a44ae4b101891d7155a397b8f5959cd

    commit 092bc27ffdd37562ccd91372cfaff91c79f5794a
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Oct 25 15:00:19 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Horizontally interpolate surface pressure assuming a standard
        lapse rate (per recommentation of Phil Pegion).  This
        reduces model initialization shock near steep terrain.

        Change-Id: I9748acde579605a76fc387124c11c31c7dfa4474

    commit eebdf594c1792330fde03239d068accd72576df6
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Oct 9 20:16:20 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Standardize error handling.

        Change-Id: I861798e99b3d1c7c116e184dc04e3fc782de8347

    commit d07ec3468703143b6ca1880cec8b9d78dfe34dba
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Oct 5 17:14:15 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add a basic prolog to the top of each module.

        Change-Id: I47741d78197c2f8f8153ef6256235bae896981b6

    commit 780029c6a6d0d3ec628e6d85cceb480840b2968b
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Oct 4 16:33:46 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Cleanup of variable declarations.  General cleanup.

        Change-Id: I978c4d6162aa1eaad7efd8523518bc05f394e690

    commit 9dbeb5a4bf20d7580717b41bf17d875ff27dd18c
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Oct 3 13:48:42 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add global attribute to atmospheric and boundary files
        that specifies which input data source was used.

        Update theia config files to explictly define all
        input source files.

        Change-Id: Ifdcc176db26c7070a1ff550d2aed78b2fdde096e

    commit 9626a74d9dfe55a9df514eff83121a028963df3f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Oct 2 18:11:48 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Remove hard-wired sfc/nsst input file names.  Update
        config files for cray accordingly.

        Change-Id: I5bbac6304f375635d9e5ff5620a883917c06eb5c

    commit bfd4c4e4e04aa19b5d6eb1a163231def60c26e65
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Oct 2 16:56:03 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Remove hard-wired input grid atmospheric file names.  Update
        Dell config files accordingly.

        Change-Id: I6f6cbec751acea32d516e0a67f4dafe97cd99c2c

    commit 1727ae775e2da4c3de1a1fff2a453dcd30e4273d
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 28 19:28:52 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add comments to input_data.F90

        Change-Id: Ic22435948bcdca68840aad989c3b942948880525

    commit 3eb8afaf720af694793e3fb25eb062afb7da6017
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 28 13:57:20 2018 +0000

        chgres_cube branch:  This commit referenes #40471.

        Updates for compiling and running on Cray.  Point to beta v8.0.0
        of the esmf library.

        Change-Id: I2ec308278481c9fa9758af3db8d7ef031b779644

    commit 58e0e214e4be5d8d40a3cc6a3e813fe80f8f4aeb
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Sep 27 19:45:32 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Updates for compiling on Dell using a local copy of
        beta v8.0.0 of esmf.

        Change-Id: I21c367827f5a8788db8de635ea283f536a3fbdd0

    commit 0631e3830b65854229fac8dccc148b13279cbac8
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Sep 27 15:06:19 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update Theia build to use esmf beta v8.0.0.  That version
        corrects a problem with FieldScatter and FieldGather for
        large array sizes (such as 3-d t1534 fields).

        Add extrapolation method NEAREST_STOD to the atmospheric
        call to RegridStore.  That eliminates problems with
        unmapped points encountered for certain grid configurations
        (Ex: T1543 gaussian to C1152).

        New routine "read_input_atm_gaussian_file" for reading
        fv3gfs gaussian history files in nemsio format.

        Remove obsolete namelist entries from all run config files.

        Change-Id: Ibf12ec0102e621cf94761548075f982d765c5f6e

    commit 07160a501362413ca83698bedcba97c6e9a642bd
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Sep 25 17:33:24 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Replace logical 'restart_file' - which determined whether
        the program was to ingest tiled history or restart files - with
        'input_type'.  The latter is set as 'history'/'restart'/'gaussian' for
        tiled history/tiled restart/gaussian history files.

        Add routine (read_input_nst_gausian_file) to read nst data from
        gaussian history file to input_data.F90.

        Change-Id: I577ba3f319d2c0ea1d99598cf55cc8147bcadb97

    commit 7cf64d52594e8e30338cd1f8bae424b81289125a
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Mon Sep 24 13:32:47 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Updates for running on Cray.

        Change-Id: Ib4e42021fd31619c4d60064cf0320cfdbd587414

    commit 68be11f25c06eab4eb70f0573bddb67a8601b0fa
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Mon Sep 24 12:40:57 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Move read of terrain from model_grid.F90 to input_data.F90.
        This allows the program to use the terrain from the
        atmospheric files when processing the atmospheric fields.
        This terrain should be more consistent with the atm
        fields than what is in the orog files.  This change will
        also improve flexibility as the number of input data
        sources increases.  For example, the gaussian data
        has no orog files, so terrain must be read in from
        the restart files.

        Change-Id: Iff532b85096ec48afd3ca7e1658ab66c86737dc5

    commit a3c5fc0edabe9d02ce3b69d22c136bb71ca44e0f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 21 13:23:31 2018 +0000

        chgres_cube branch:  This commit references #40471.

        input_data.F90 - Place 2-d to 3-d wind conversion in its
        own routine.

        Change-Id: Iad7c8460fbcbc9e9d4cbbd2c5529331c9604ebda

    commit d8b8c675e1e9ab386eb7cc5058e2f7e6f368304b
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 21 12:16:01 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Change variable name 'levp_input' to 'levp1_input'.

        Change-Id: Iaa91b691d8747b6906ecd10ddb0f61d40855d5e7

    commit d9382ae01c4b0289047c6390a1c234d6ef8fb7e1
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Sep 18 17:51:43 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Logic to process surface fields from an fv3 gaussian nemsio
        file.

        Change-Id: I486960805c2c8dd4020438aba11ed8504fac3739

    commit 253834853c3c5e0e76257c9402135bfe0de64c9f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 14 19:31:02 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add some logic to ingest fv3gfs gaussian nemsio files.
        Currently, only tiled netcdf files may be ingested.

        Change-Id: Ibc8606fcb63f9c955e636e0200bc8b634155b559

    commit 754e2f8161b60a0b7c8bea1f3c58a07afbbcc65d
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 7 20:40:48 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add script and sample configuration files for running on Dell.

        Change-Id: I6999f9a9ad43b4d62d72e181c431e85dbd48899c

    commit fa7d51a9795f0e85ece97655434233b2f3433ac0
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Sep 7 14:48:24 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update regional boundary condition logic to include a
        blending halo located within the computational grid.
        Halo indices are now defined with respect to the
        computation grid instead of the whole grid (computational
        plus lateral halo).

        Change-Id: I4429659172403c135c16df530e592a80e7912eab

    commit 94d1f288ab2994f851862338e06625c96aaa915a
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Sep 4 13:48:36 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update atmospheric write routine to write each tile on
        its own mpi task.  Previously, all tiles were written
        sequentially on task 0.

        Change-Id: Ica45f3320970c105f2cda42f1becd83a311f784e

    commit d18199b2bd07a22976fd04181cda179990a5bebd
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Aug 31 18:42:02 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Remove all 'goto' statements.

        Change-Id: I3a66a5254df2d3e5f3cb6bf12f44d96ead3b9f96

    commit 17863752b96a772ee5cd6bfd9c96b904a77f95f5
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Aug 31 14:40:24 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Read input history file tiles in parallel instead of sequentially.

        Change-Id: Ifa29876014fe516249c788d3f2f81f543ffda171

    commit 9cba10d151de587b6b63644f77bf74b073cb16c8
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Aug 30 20:22:06 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update routine "read_input_atm_restart_data" to read each
        tile on its own mpi task (or pet).  Previously, each
        file was read sequentially on task 0.  Tests on theia
        showed results do not change, and wall clock time
        is reduced.

        Change-Id: I30899db560be58586871dc886283f0766957bef3

    commit 4a59accf411686b26128d93e34ad63d9892facff
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Aug 29 20:06:44 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add config files for running the following transforms
        on Theia:
        (1) C768 L64 to C768 L91; (2) C768 L64 to C1152 L91

        Both transforms ran sucessfully.

        Remove some diagnostic print.

        Change-Id: I698d92a016010ad9bc01171ecfe015802275b2ee

    commit fd3736a88cf1913ce6f9896f734be819f354d9f3
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Aug 15 15:27:16 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add option to read in a weight file for part of the
        atmospheric interpolation.  If weight file not available,
        then FieldRegridStore is called as before.  Using
        weight file reduces wall clock time slightly and
        does not change results.

        Change-Id: I956bb094315f723840c62a7ee3dd2faeadba70c1

    commit f3bb2e3ed2d77e53c6da98c6241c62491316d88f
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Aug 14 18:39:15 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Remove extra calls to FieldRegridStore.  Results do not
        change.  Wall clock time reduced slightly.

        Change-Id: Icc93054d844752c5299bdc64c4c117c291b86a09

    commit fbb566f9143d1b3a686f351d95352d1de4a9489e
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Mon Aug 6 20:28:20 2018 +0000

        chgres_cube branch: This commit references #40471.

        Remove subroutine 'flip' and replace with F90 statements to
        reverse arrays in 'z' direction .  The latter is much faster.

        Change-Id: I1a405cc48c7e1981c908e64c77e0d65e0e875caa

    commit 963246d6061c4dd49001cc226e9df082931b5037
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Aug 3 20:12:02 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add two new tests for Theia.

        Change-Id: I2fbb5a33ca236bf289eb643b0d361b1fe46b3419

    commit 339b732caad6aa3c19fc0c533799d90978b3b16c
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Fri Jun 22 19:20:19 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update 'make.sh' to build on WCOSS Phase 1/2.

        Change-Id: I9f6e0fd0154c2874be61af85a8e6b16946f70704

    commit cbbb9644a5ef56acecd2cfc03e805414e5e67035
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Jun 20 20:14:32 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add 3-d temperature and delta-p to target grid atmospheric
        netcdf file.

        Change-Id: I505df46a097c772b2cb0c792e18a0db66f9d0d20

    commit dcaaba32b355e93720331fe5c0a3ee17d2c64d60
    Merge: d868f97 eb1a299
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Jun 15 13:36:09 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit d868f9737108d583451971bd7f7ac66d9792244a
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Fri Jun 15 13:32:07 2018 +0000

        chgres_cube branch:  This commit references #40471.

        When ingesting 'restart' files, get model top pressure from
        the "fv_core.res.nc" file.

        Change-Id: Ib9856ceb7743ce8c9be6692128e4616c1c7d4e76

    commit bce294fc9b507cdaacdda89af652fda786746d49
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Thu Jun 14 17:59:41 2018 +0000

        chgres_cube branch:  This commit references #40471.

        New namelist variable 'restart_file' to control whether
        input files are 'restart' or 'history' files.

        Change-Id: I969651711fa83c038574093447a7b8d4c05c41ba

    commit 73ddc22b528362edc7b5f5a05de94301bc00e9ba
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Wed Jun 13 21:27:21 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add logic to process GFDL microphysics tracers.

        Change-Id: Iad9e15cc6477ecfc01120400826c0cf6e660a1ce

    commit 2a82e038a21fc6de82189362133d92a329ad101f
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Jun 11 19:09:45 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update "make.sh" for building on Dell.

        Change-Id: Iba4915467e315ebc83d4fed7e838391681a84a5f

    commit 9f9d9531ae37ca81608892b50d390d5c3513ce1d
    Author: George <George.Gayno@noaa.gov>
    Date:   Fri Jun 8 20:22:51 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Preliminary modifications to read input atmospheric fields
        from 'restart' files.  Currently, program only ingests
        atmospheric 'history' files.

        Change-Id: Iac0d3cf7672d108653ddb9da620b8cf68b361877

    commit 94658f59fbb7d9d21bf773d1f8cd0a71dc485e92
    Author: George <George.Gayno@noaa.gov>
    Date:   Thu Jun 7 20:57:44 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update to ingest tiled "restart" surface files.
        Previously, only tiled "history" files could be ingested.

        1) New routine to read tiled restart surface files -
        "read_input_sfc_restart_data"

        2) Rename existing read routine to "read_input_sfc_history_data".

        3) Add logic to determine if surface file is a 'restart' or
        'history' file.  Logic checks for 'xaxis_1' in the header.
        If it exists, a 'restart' file is assumed.

        Change-Id: I0ab138d165d7f2646440acc07ee5691c726a1e85

    commit 822ccffc37ee4f81398ebfdcfbbad8e39d946149
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon May 21 18:09:17 2018 +0000

        chgres_cube branch:  This commit references #40471.

        New routine "write_fv3_atm_bndy_data_netcdf" that outputs
        an atmospheric lateral boundary file.  Supports
        stand-alone regional grids.

        Change-Id: Ic6a63a4d915ba7fd870e9c151ff274f90df0a059

    commit d11d7cd2d534a3ea2756928a00423d7ca5c68236
    Author: George <George.Gayno@noaa.gov>
    Date:   Wed May 16 20:47:04 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add "extrapMethod" argument to atmospheric regridding.  This
        prevents a random glitch when interpolating winds from the center
        of the grid box to the box edges.

        Add halo removal logic for atmospheric file.  Fix bug in
        halo removal logic for surface file.

        Change-Id: Idbee39ded541db7cb11dadc4b488759a736ce7b4

    commit 325b729346b4303d2c2d142d6685ae5cb2e5b167
    Merge: 3e46722 cebba5c
    Author: George <George.Gayno@noaa.gov>
    Date:   Fri May 11 14:21:49 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 3e467223e7ce3d23b3e0a8a8f47d5e233fa3c69a
    Merge: 00921a5 ac03c87
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu May 3 19:55:50 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 00921a50e7c7dffe3bc0194e1a9b93fcbf87cde5
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Apr 30 17:33:17 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update to use v7.1 of ESMF instead of a beta snapshot.

        	modified:   chgres_cube/sorc/make.sh

        Change-Id: I0fc15198c3abb2c28ee758df8dc37bd3c008924c

    commit 930b87fd892009906db444e44fefd602248d883e
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Tue Apr 24 13:55:34 2018 +0000

        chgres_cube branch:  This commit references #40471.

        New routine "write_fv3_atm_header_netcdf" to write the "gfs_ctrl.nc"
        header file, which contains tracer and vcoord information.

        Modify to read input surface data from tiled model history files.

        Change-Id: I39f0d573c2cae3b17f4758973d7bf002dcd7afbf

    commit 937997b65ee77b09ac69151db9388f0c107d38b7
    Merge: ca61546 0e9d2d1
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Fri Apr 20 17:36:18 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit ca61546139daa5e51a409fa6a538503c10dd5742
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Fri Apr 13 13:32:40 2018 +0000

        chgres_cube branch:  This commit references #40471.

        New routine 'vintg' for vertically interpolating between the
        input and target hyb-sigma levels.  This routine is taken
        from the GFS CHGRES code, which assumes the lowest model
        level in index '1'.  This is opposite the fv3 convention.
        Therefore, add a vertical 'flip' of the fv3 data after
        the read and before the write of the atmospheric files.

        New routine 'compute_zh' to compute heights.

        To save memory, reduce the number of 3-d arrays during
        write of atmospheric file.

        Change-Id: Ia256b6d348d277119ab1e23da6d00f3653dd8eeb

    commit 6c95bf7246b74edef319814a13f3667b1cdcb6d7
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Apr 9 20:52:51 2018 +0000

        chgres_cube branch:  This commit references #40471.

        New routine 'newpr1' which computes 3-d pressure based on
        'ak' and 'bk'.

        Add esmf fields to hold data on target grid before
        vertical interpolation (denoted by 'b4adj' in
        the variable name).

        Change-Id: Ic9c9175f268f124c0d63498a9e771fe679456782

    commit 4c5b40a11daf499c55f9000224c08dc3589d7d98
    Merge: ebee537 6482117
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Apr 9 17:36:57 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube.

    commit ebee53765fe252dec7517d332771ef7a847670cf
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Apr 9 17:22:27 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Several updates to the atmospheric data processing:

        1) Add horizontal interpolation of 3-d temperature.
        2) Read input data from the tiled model history files instead of
        the coldstart files from CHGRES.  These files store the
        winds unstaggered (at the center of the grid box).
        3) Add read of target grid 'vcoord' file.
        4) New routine 'newps' to adjust surface pressure to new terrain.

        Change-Id: I653dbc741f785b42ce6fba51333530dd873bd9ef

    commit 181f712adb0310f098b1f2c1ce2d6b870fd81a0b
    Author: George <George.Gayno@noaa.gov>
    Date:   Wed Apr 4 14:02:30 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Add read of vertical coordinate file to get 'ak' and 'bk'
        for the target grid.

        Change-Id: I3ba9fbc8e5205e3c5ef6a04da955d52094197ce9

    commit 25c8b572cd74aae0d826ed805ce75b47acad95e8
    Merge: 7e00515 7b3afc8
    Author: George <George.Gayno@noaa.gov>
    Date:   Tue Apr 3 12:16:15 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 7e00515e2e1069d491f359c1eee9a63f84000732
    Merge: c2ff052 8725547
    Author: George <George.Gayno@noaa.gov>
    Date:   Tue Mar 27 19:48:54 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit c2ff0525532b1ed078c4e6bb258dd46f85e40ff6
    Merge: 8fd71e9 0c7e545
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Mar 22 14:20:13 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 8fd71e907923b2df457d8cb80550e4a0ced1ea2d
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Tue Mar 20 18:50:13 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Update theia build to point to official esmf version 7.1.0.
        Add "module use" statement for locating NCEPLIBS.

        Change-Id: If06900baa3c70b9713a3d15b25d2a89fd569d5a8

    commit 5a61108655e8f253fe1cddabc3cc9dd92f2fcf04
    Merge: f944749 7fdcd04
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Mar 19 18:18:58 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit f944749861cc6ecfcb8439c38525f42184d2eda1
    Merge: a47764d 3169078
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Mar 5 13:45:28 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit a47764d197d896b3aced87a390571ac7b9e3bb9a
    Merge: 944f618 ecf67b6
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Feb 22 18:24:50 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 944f6180e7500e6238685e8ae51d4d1a68c9f919
    Merge: 73c0c43 03b9b56
    Author: George <George.Gayno@noaa.gov>
    Date:   Tue Feb 20 13:56:03 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 73c0c436bd431dd2b7bb88e87046d42e69bb1d80
    Merge: f697860 6b2de36
    Author: George <George.Gayno@noaa.gov>
    Date:   Mon Feb 12 13:36:35 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit f697860ab83ff8bcec2383dbe8d4cee86de1b84c
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Feb 8 21:46:24 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Minor script changes related to recent master merge.

        Change-Id: Ibd0d61e3d7da3be6675195d0d8c3b4def38f70d4

    commit 5024394887414c4f65e6921419ac8e1550108be7
    Merge: 72778cb 2b9a059
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Feb 8 21:33:29 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

        Change-Id: Iadb058b872c1d578acf9895a1321923a8bd71c73

    commit 72778cb00dac9f97cfdb5a6085025c80cccaee91
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Jan 29 19:32:42 2018 +0000

        chgres_cube branch: This commit references #40471.

        To ensure bit identical results for varying task counts, the
        following modifications were done: (1) The argument "isrctermprocessing=1"
        was added to all calls to ESMF_FieldRegridStore; (2) The argument
        "termorderflag=ESMF_TERMORDER_SRCSEQ" was added to all calls
        to ESMF_FieldRegrid.

        Change-Id: I354cbd94b5c9e63a8e5635dfb2a2a32fe91426e3

    commit e263d0e6d5fce3f24cd0f15ae849be412fff161f
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Jan 8 21:04:00 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Move all interpolations of surface fields into their
        own routine ("interp").

        Change-Id: I1c1ffd972566092e17f9850bbfdfce2b3965abe2

    commit 574bb6f72998099b7aacc8a15220de2637ba727b
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Jan 8 19:33:52 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Move processing of nst fields to surface.F90 to ensure consistency
        between TREF and SST.  This was a problem with the OPS version
        of CHGRES (see issue #44638.).  Remove now obsolete routine
        nst.F90.

        Change-Id: Ifb7bf631ef75cdf2af8eb0ff3f77e236996224db

    commit bdb63dd83f7bf23fe198650fc84cc631428d7d6f
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Jan 4 19:46:18 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Change default value of SST to be the same latitudinal dependent
        guess as that used for TREF.

        Change-Id: If2d0f1f13d4f7bb318c11003eb062c53609f1d92

    commit 735e35ba6efcafe94db47540416b64578d13bb97
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Jan 4 14:38:19 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Simplify driver.  General cleanup.

        Change-Id: I1b227f5f909ec42e4a2a664ccd324df0a2a19da8

    commit 8f7e672cdcd40795afa721dbd7f6347ac876ab1f
    Merge: 9743273 3073c50
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Jan 3 17:29:16 2018 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 9743273c09dfb4b4d8931fb0583198d57274dd23
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Jan 3 17:18:43 2018 +0000

        chgres_cube branch:  This commit references issue #40471.

        Add interpolation of u/v winds (on the staggered grid).  The
        method is based on the vector interpolation in the model's
        write component (by Jun Wang): (1) convert from 2-d cartesian
        components to 3-d. (2) Horizontally interpolate the 3-d
        components to the target grid. (3) Convert from the 3-d
        components back to 2-d.

        Change-Id: If5110c8c20db8c5ad110f74a9f219e97799705f8

    commit 1d90bf06dde893c5f28873fb016f874dc9dfc7e0
    Merge: 04e2f1e 7bf492a
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Dec 21 19:16:33 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit 04e2f1ec01dd032fd60893d54ba280759737521f
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Dec 21 19:12:01 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Add read of latitude and longitude at the 's' edge and store
        as ESMF fields.  Lat/lon is required to interpolate
        the staggered winds.

        Change-Id: I1f5d2a26522547a8887942b386175f65c6de9767

    commit df04cc2fa792e0ed0b271e4bd395a400d80f3993
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Dec 20 20:19:32 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Rename routine "get_model_mask" to "get_model_mask_terrain" and
        remove read of lat/lons from the orography file.

        New routine "get_model_latlons" to read lat/lon from the 'grid'
        files.  The 'grid' files have lat/lon on the staggered grid,
        which will be needed when interpolating winds.  The orography
        files only have lat/lon on the 'A' grid.

        Change-Id: If291bb2f0b1e2294b52e7775347f756cdf68c6c5

    commit e76e7f236a520428e35c2d9f79b18dea2fd45fe5
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Dec 20 14:55:19 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Switch from ESMF 7.1.0bs39 to 7.1.0bs44 (Theia).  Latest
        version corrects bug in GridCreateMosaic for stand-alone
        nests.

        Change-Id: I50b271be7fbfabc14a51f4cc848308c3d8143d70

    commit 56de1e7b5c857da69a63fe9473f6e3a4f01e35a4
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Fri Dec 15 18:41:50 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Replace all remaining F77 netcdf functions with their
        F90 counterparts.

        Change-Id: Ieaea4b5485079b44d3c49e49556b2e2eba56b7f6

    commit 23ece3b7d201be3c017d890576bc65c452e5810a
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Fri Dec 15 16:02:32 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Point (on Theia) to an updated ESMF v7.1.0bs39 library (was
        recompiled with -precise flag).

        Update read/write of atmospheric fields to use F90 versions
        of NetCDF functions.

        Change-Id: Iccd7b96a91b7d4d498847d00fec7679420852f87

    commit 0eb38c145d8935b644ac014e65432a8e93f0f4fc
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Dec 14 21:43:47 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Update Cray build to use ESFM v7.1.0bs39.

        Change-Id: I5cc221fb2be80ddfc4e55cae183b64f671b97553

    commit 7f6369774f00955df5543c8a61212f59a52c0373
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Thu Dec 14 21:16:02 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Update ESMF error handling per Gerhard's suggestion.

        Change-Id: I29b882c178f6595f8d371d6bddb8b080a00f88d7

    commit bb2bccc4832080366bf49d67a1dbaa63881bf189
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Dec 13 21:00:39 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Update to use v7.1.0bs39 of the ESMF library, which is only
        available on Theia currently.

        Change-Id: I4be45d0dc3e5c9646c6ff52d57b27639665c4b93

    commit 1976a12346150a8a6093105089820637f4f5037c
    Merge: e362248 8585699
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Wed Dec 13 17:23:00 2017 +0000

        chgres_cube branch:  This commit references #40471.

        Merge branch 'master' into chgres_cube

    commit e362248b338582f8c6f75e8ffacf328738a0a30c
    Author: George Gayno <george.gayno@noaa.gov>
    Date:   Mon Nov 6 15:16:09 2017 +0000

        This commit references #40471

        Initial commit of the CHGRES cube-to_cube program to the chgres_cube
        branch.  This initial version only processes surface and NSST
        fields.  There are some hooks for processing the atmospheric fields.

    Change-Id: I33fa9e96637817dbe36e180e98b3b0c5e55b6945

commit 04f0e75
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Apr 12 20:18:54 2019 +0000

    remove sourcing  ~/.bash_profile in run_gfsmos_master.sh.dell. Otherwise the program crashes on Dell

commit 1c4de6b
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Apr 8 01:59:58 2019 +0000

     for Issue#62220, update earc.sh to not overwrite enkfgdas_grp for the first cycle

commit 71af83f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Apr 3 19:38:51 2019 +0000

    Merge GFS.v15.1.0 implementation branch q2fy19_nco to the master

      * Update model tag to nemsfv3gfs_beta_v1.0.18 to
        add restart capability of running GFS long forecast from the end or a failing point
        of last attempt.  restart_interval_gfs is used to control the frequency of writing
        out restart ICs, which are saved under ROTDIR for emc parallels and NWGES for NCO
        production.  exglobal_fcst_nemsfv3gfs.sh script has been modified to autimatically
        detect if the model should execute as a cold, or warm start, or as rerun.
        If it is a rerun, the script will look for saved ICs that is restart_interval_gfs
        hours back from the last ending point.
      * Correct a bug in precip units in the computation of frozen precipitation flag (srflag).
      * Write fields that are continuously accumulated in model integration in restart files
        so that after a restart their acummulated values can be read in. (FV3 Issue #61788)
      * Use 8x24 instead of 12x16 layout in config.fv3 for C768
      * Address restart I/O issues #60879
      * Update gsi tag to fv3da.v1.0.43 (Q3FY19 GDAS observation upgrade).
      * Merge NCO's changes to q2fy19_nco branch and then to the master.
      * Update GFS.v15 release notes.
      * Replace current ecflow/def file swith NCO's copies.

      Changes to be committed:
     	renamed:    docs/Release_Notes.gfs.v15.0.0.txt -> docs/Release_Notes.gfs.v15.1.0.txt
     	renamed:    docs/Release_Notes.gfs_downstream.v15.0.0.txt -> docs/Release_Notes.gfs_downstream.v15.1.0.txt
     	renamed:    ecflow/ecf/defs/prod00.def -> ecflow/ecf/defs/para00_gfs_FV3.def
     	renamed:    ecflow/ecf/defs/prod06.def -> ecflow/ecf/defs/para06_gfs_FV3.def
     	renamed:    ecflow/ecf/defs/prod12.def -> ecflow/ecf/defs/para12_gfs_FV3.def
     	renamed:    ecflow/ecf/defs/prod18.def -> ecflow/ecf/defs/para18_gfs_FV3.def
     	new file:   ecflow/ecf/defs/para00_gdas_FV3.def
     	new file:   ecflow/ecf/defs/para06_gdas_FV3.def
     	new file:   ecflow/ecf/defs/para12_gdas_FV3.def
     	new file:   ecflow/ecf/defs/para18_gdas_FV3.def
     	modified:   driver/product/run_JGFS_AWIPS_G2_dell.sh_00
     	modified:   gempak/ush/gfs_meta_ak.sh
     	modified:   gempak/ush/gfs_meta_us.sh
     	modified:   jobs/JGFS_AWIPS_G2
     	modified:   jobs/JGLOBAL_FORECAST
     	modified:   parm/config/config.base.nco.static
     	modified:   parm/config/config.fcst
     	modified:   parm/config/config.fv3
     	modified:   parm/config/config.resources
     	modified:   scripts/exglobal_fcst_nemsfv3gfs.sh
     	modified:   sorc/checkout.sh

commit 193f883
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Tue Mar 12 20:32:47 2019 +0000

    Vlab issue #59733.

    Add interface block for routine "write_fv3_data_netcdf" to
    the chgres.f90 driver.  An interface block is required
    when optional arguments are used.  This routine has one:
    NSST_OUTPUT.

    Squashed commit of the following:

    commit 43af677678427218bfc689450e2a8e893cb81cb2
    Merge: 09406ee5 595d44c
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Mar 12 18:25:09 2019 +0000

        chgres_wrterr branch:  This commit references #59733.

        Merge branch 'master' into chgres_wrterr

    commit 09406ee5a6be3eb2e9b96e84f460b0b5b743f9bb
    Author: George Gayno <George.Gayno@noaa.gov>
    Date:   Tue Feb 5 21:39:25 2019 +0000

        chgres_wrterr branch:  This commit references #59733.

        Add interface block for routine "write_fv3_data_netcdf" to
        the chgres.f90 driver.

        Change-Id: Ic30af24b2c2704f1915ab93eeffbe0716a462e73

    Change-Id: I19516cd1ad77aa62b3b311745ac63be139947fc2
    @jkhender
    jkhender committed Jul 22, 2019
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  2. - add changes needed to run CCPP version of NEMSFV3GFS for GFDL MP or… 

    … GSDSuite (GF, MYNN, RUC LSM, Thompson MP)

  -- change compilation options in build_fv3.sh  (assumes CCPP suites suite_FV3_GFS_v15.xml and suite_FV3GFS_GSD_v0.xml)
  -- change executable name to global_fvgfs_ccpp.x
  -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn
  -- add ccpp_suite variable to atmos_model_nml portion of namelist
  -- created new exglobal forecast scripts with namelist options
  -- define suite definition file (CCPP_SUITE) in config.fcst
  -- add new aeroic task to workflow for Thompson microphysics
  -- modify checkout.sh to add new directory, sorc/aeroconv  (read README.md to extract files)
  -- change nstf_name in namelist from 2,0,0,0,0 to 2,1,1,0,5   (config.nsst settings)
    @jkhender
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Commits on Jul 23, 2019

  1. - updated lsm=3 for RUC LSM in config.fcst_GSDsuite 

    - changed FHCYCLE=0 for RUC LSM in config.base.emc.dyn_GSDsuite
    @jkhender
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Commits on Aug 7, 2019

  1. updated fcst configuration files`

    @jkhender
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Commits on Nov 18, 2019

  1. VLab Issue #67188 - sync merge with develop branch after v15.2 commits

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Nov 18, 2019
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  2. VLab Issue #67188 - updated GSI checkout revision and turned on wafs … 

    …build for all machines
    @KateFriedman-NOAA
    KateFriedman-NOAA committed Nov 18, 2019
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Commits on Nov 20, 2019

  1. added CCPP-FV3 checkout to checkout.sh

    @jkhender
    jkhender committed Nov 20, 2019
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  2. add link so fv3gfs.fd points to fv3gfs_ccpp.fd checkout

    @jkhender
    jkhender committed Nov 20, 2019
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Commits on Nov 26, 2019

  1. - rename *GSDsuite files to original names (config.base.emc.dyn, conf… 

    …ig.fcst, exglobal_fcst_nemsfv3gfs.sh)

- moved convective options from config.fcst to config.base
- created separate _v15 files
    @jkhender
    jkhender committed Nov 26, 2019
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  2. Merge branch 'develop' into gmtb_ccpp 

      d2f877f - Thu Nov 14 19:34:51 2019
    @jkhender
    jkhender committed Nov 26, 2019
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  3. corrected version of FV3 to check out (nemsfv3_gfsv15.2.1)

    @jkhender
    jkhender committed Nov 26, 2019
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Commits on Dec 2, 2019

  1. VLab Issue #67188 - updated ProdGSI revision and resource settings

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Dec 2, 2019
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  2. VLab Issue #67188 - fix to env/WCOSS_C.env

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Dec 2, 2019
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  3. Merge branch 'port2hera' into gmtb_ccpp_hera

    @jkhender
    jkhender committed Dec 2, 2019
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  4. update checkout.sh to use dtc/develop branch from NCAR:ufs-weather-mo… 

    …del repository
    @jkhender
    jkhender committed Dec 2, 2019
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  5. corrected directory name and added logfile in checkout.sh

    @jkhender
    jkhender committed Dec 2, 2019
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  6. add specific version for dtc/develop branch in checkout.sh

    @jkhender
    jkhender committed Dec 2, 2019
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  7. update build_fv3.sh for compiling CCPP version

    @jkhender
    jkhender committed Dec 2, 2019
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  8. updated config.base.emc.dyn files

    @jkhender
    jkhender committed Dec 2, 2019
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Commits on Dec 3, 2019

  1. updated forecast configuration files

    @jkhender
    jkhender committed Dec 3, 2019
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  2. - updated aeroic.sh for hera 

    - temporary fix for fv3ic.sh for now to create FV3 ICs using FV3GFS nemsio files
- moved convective options to config.fcst* files
- updated links for diag and field tables for GSD
- add CCPP executable to link_fv3gfs.sh
    @jkhender
    jkhender committed Dec 3, 2019
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Commits on Dec 4, 2019

  1. set RUCLSM with other land surface model options

    @jkhender
    jkhender committed Dec 4, 2019
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  2. merge in changes from develop branch 

      -- GFSv15.2.3 ncep_post tag update
  -- GFSv15.2.4 change
    @jkhender
    jkhender committed Dec 4, 2019
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  3. for now, comment out top 2 lines in diag tables for GSD; otherwise, g… 

    …et invalid file format error
    @jkhender
    jkhender committed Dec 4, 2019
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  4. updates for running GDFL mp with CCPP

    @jkhender
    jkhender committed Dec 4, 2019
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  5. - define satmedmf earlier in config.fcst for MYNN 

    - add new experiment setup scripts
    @jkhender
    jkhender committed Dec 4, 2019
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Commits on Dec 5, 2019

  1. add 'git submodule sync' command to checkout.sh for fv3gfs_ccpp.fd

    @jkhender
    jkhender committed Dec 5, 2019
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Commits on Dec 9, 2019

  1. -- modify checkout.sh to add new directory, sorc/aeroconv

    @jkhender
    jkhender committed Dec 9, 2019
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Commits on Dec 10, 2019

  1. - adding changes to correct setting of ictype when generating FV3 ICs

    @jkhender
    jkhender committed Dec 10, 2019
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  2. Merge branch 'develop' into gmtb_ccpp_hera 

    	modified:   jobs/JGFS_CYCLONE_TRACKER
	modified:   jobs/rocoto/getic.sh
	modified:   parm/config/config.resources
	modified:   parm/config/config.vrfy
	modified:   ush/syndat_qctropcy.sh
    @jkhender
    jkhender committed Dec 10, 2019
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Commits on Dec 11, 2019

  1. - added aeroic task dependency for gfsfcst 

    - added new python script without aeroic task
- updated testemc.sh to use python script without aeroic task
    @jkhender
    jkhender committed Dec 11, 2019
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Commits on Jan 13, 2020

  1. * add Lin Gan's scripts

    @jkhender
    jkhender committed Jan 13, 2020
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  2. corrected syntax for ttendlim variable

    @jkhender
    jkhender committed Jan 13, 2020
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  3. - added changes for creating one config.fcst and config.base.emc.dyn … 

    …file

  (for now, still need to define CCPP_SUITE in config.base)
- made config.base.nco.static executable
- removed fcst and base.emc.dyn files for v15
- made aeroic.sh Korn shell script
    @jkhender
    jkhender committed Jan 13, 2020
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  4. - make default CCPP suite GSD_v0 

    - define convective options based on CCPP_SUITE
    @jkhender
    jkhender committed Jan 13, 2020
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Commits on Jan 16, 2020

  1. - new exglobal_fcst_nemsfv3gfs.sh script (merged from coupled_crow) 

    - moved module commands rom aeroic.sh to module_base.hera
- copy namelist to output directory
    @jkhender
    jkhender committed Jan 16, 2020
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Commits on Jan 17, 2020

  1. updated forecast configuration

    @jkhender
    jkhender committed Jan 17, 2020
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Commits on Feb 5, 2020

  1. - added links for Thompson lookup tables 

    - corrected setting of gPDY and gcyc in forecast_predet.sh script
    @jkhender
    jkhender committed Feb 5, 2020
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Commits on Mar 31, 2020

  1. merge 26Mar20 develop branch into gmtb_ccpp_hera 

    Squashed commit of the following:

commit 0e0dc87
Merge: b133700 95a6343
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Thu Mar 26 10:54:44 2020 -0400

    Merge pull request NOAA-EMC#42 from NOAA-EMC/hotfix/viewer

    Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer

commit 95a6343
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Mar 26 14:43:44 2020 +0000

    Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer

commit b133700
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Mar 26 13:01:38 2020 +0000

    Issue NOAA-EMC#21 - correct syntax for machine if-blocks in setup_expt scripts

commit f4ee509
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Mar 25 20:52:49 2020 +0000

    Issue NOAA-EMC#21 - remove unneeded logic from partition check

commit 4acc80f
Merge: accb6f4 fb1c79f
Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com>
Date:   Wed Mar 25 15:22:51 2020 -0400

    Merge pull request NOAA-EMC#40 from NOAA-EMC/port2wcoss3p5

    Issue NOAA-EMC#21 - Add support for WCOSS phase 3.5

commit fb1c79f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Mar 25 16:06:54 2020 +0000

    Issue NOAA-EMC#21 - updated WCOSS phase 3.5 queues

commit 08a5354
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Mar 25 14:58:14 2020 +0000

    Issue NOAA-EMC#21 - add phase 3.5 support

    - add partition option to setup scripts
    - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts
    - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

commit accb6f4
Merge: 057b2a8 8b51b56
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Mar 23 14:01:30 2020 -0400

    Merge pull request NOAA-EMC#39 from NOAA-EMC/feature/verif-tag

    Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub

commit 8b51b56
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Mar 23 17:40:18 2020 +0000

    Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub

commit 057b2a8
Merge: 0377d20 622167d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Mar 11 12:00:58 2020 -0400

    Merge pull request NOAA-EMC#29 from NOAA-EMC/feature/manage_externals

    Issue NOAA-EMC#3 - Introduce manage_externals as replacement for checkout.sh

commit 622167d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 18:20:31 2020 +0000

    Issue NOAA-EMC#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh

commit e83b90d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 17:00:15 2020 +0000

    Issue NOAA-EMC#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already

commit 8699b46
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 16:30:54 2020 +0000

    Issue NOAA-EMC#3 - updated README with new manic version

commit e602cd3
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 16:27:57 2020 +0000

    Issue NOAA-EMC#3 - updated link_fv3gfs.sh to adjust wafs links

commit 830c73f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 15:21:45 2020 +0000

    Issue NOAA-EMC#3 - update EMC_verif-global tag in Externals.cfg after sync with develop

commit 40084e6
Merge: f662fff 0377d20
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Mar 6 15:18:52 2020 +0000

    Issue NOAA-EMC#3 - Merge branch 'develop' into feature/manage_externals

commit 0377d20
Merge: 1b359db 2552467
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Thu Mar 5 08:43:16 2020 -0500

    Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2

    Issue NOAA-EMC#8 - add switch for MET+ jobs

commit 2552467
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Mar 5 13:31:02 2020 +0000

    Issue NOAA-EMC#8 - add switch for MET+ jobs

commit 1b359db
Merge: 0359d34 31bb7d3
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Mar 4 10:19:36 2020 -0500

    Merge pull request NOAA-EMC#26 from NOAA-EMC/feature/metplus

    Feature/metplus - refactored MET+ jobs to resolve timing issues

commit 31bb7d3
Merge: eb73e52 0359d34
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Wed Feb 19 15:24:42 2020 +0000

    Merge branch 'develop' into feature/metplus

commit f662fff
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Feb 14 15:57:05 2020 +0000

    Issue NOAA-EMC#3 - Updated README with new manic tag v1.1.7

commit e3196a8
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Thu Feb 13 15:59:06 2020 -0500

    Update README.md

commit e46b175
Merge: 4bd0e20 0359d34
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Feb 13 20:38:04 2020 +0000

    Issue NOAA-EMC#3 - sync merge with develop branch

commit 0359d34
Merge: 1d9a1f0 bd00cb9
Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com>
Date:   Thu Feb 13 09:53:59 2020 -0500

    Merge pull request NOAA-EMC#19 from NOAA-EMC/feature/remove_theia

    Feature/remove theia

commit eb73e52
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri Feb 7 14:04:37 2020 +0000

    Update EMC_verif-global checkout to verif_global_v1.5.0

commit bd00cb9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Fri Feb 7 13:41:05 2020 +0000

    Issue NOAA-EMC#4 - bug fix in getic.sh for v15

commit 1c85197
Merge: 67dae40 1d9a1f0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Fri Feb 7 13:27:18 2020 +0000

    Issue # 4 - Sync merge branch 'develop' into feature/remove_theia

commit 1d9a1f0
Merge: 3ed9267 bdbecaa
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Fri Feb 7 08:11:21 2020 -0500

    Merge pull request NOAA-EMC#18 from lgannoaa/exception_handling

    Exception handling

commit 4bd0e20
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Thu Feb 6 11:55:31 2020 -0500

    Update README.md

commit d9ea1ac
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Feb 6 16:03:11 2020 +0000

    Issue NOAA-EMC#3 - reduce hashes down to minimum 8 characters

commit bdbecaa
Author: Lin.Gan <lin.gan@noaa.gov>
Date:   Wed Jan 29 15:15:52 2020 +0000

    Display exception handling message for individual package with location of the log file

commit b64fd5f
Merge: cf00863 3ed9267
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jan 28 15:24:37 2020 +0000

    Merge branch 'develop' into feature/manage_externals

commit cf00863
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jan 28 15:23:14 2020 +0000

    Issue NOAA-EMC#3 - remove copy of manage_externals under util and add README.md file

commit c12e879
Author: Lin.Gan <lin.gan@noaa.gov>
Date:   Mon Jan 27 19:38:19 2020 +0000

    Implement exception handling in build_all script

commit bfc7bb0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jan 27 19:06:17 2020 +0000

    Issue NOAA-EMC#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

commit 4d5713d
Author: Lin.Gan <lin.gan@noaa.gov>
Date:   Fri Jan 24 15:51:28 2020 +0000

    Testing github commit

commit 786806f
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri Jan 24 15:04:16 2020 +0000

    Missed file format updates in a few places in config.metp

commit d0a3b53
Author: Lin.Gan <lin.gan@noaa.gov>
Date:   Fri Jan 24 14:30:29 2020 +0000

    init commit for exception handling branch

commit c11dfef
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri Jan 24 14:07:29 2020 +0000

    Update EMC_verif-global tag to verif_global_v1.4.1

commit 0ea809c
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Thu Jan 23 13:29:56 2020 +0000

    Update file format variable in config.metp of online archive files

commit c0d7179
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Tue Jan 21 16:37:16 2020 +0000

    Add updated env machine files for gfsmetp

commit 82e6907
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Tue Jan 21 16:29:23 2020 +0000

    Update config.resources for gfsmetp

commit 72e8adf
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Tue Jan 21 16:19:31 2020 +0000

    Update EMC_verif-global tag checkout to 1.4.0

commit 6872f79
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Tue Jan 21 16:14:25 2020 +0000

    Add rocoto METplus job script

commit 9c94156
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Tue Jan 21 16:09:13 2020 +0000

    Changes to setup_workflow.py for gfsmetp metatask

commit 3ed9267
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jan 14 19:32:36 2020 +0000

    Issue NOAA-EMC#10 - mid-year update to bufr station list (develop)

commit 1915aa9
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Jan 10 18:36:32 2020 +0000

    Issue NOAA-EMC#8 - pulled in config.metp and modifications to two setup scripts

commit 67dae40
Merge: f78eb1b 091f4ba
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jan 8 20:15:45 2020 +0000

    Merge branch 'develop' into feature/remove_theia

commit f78eb1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jan 8 20:13:08 2020 +0000

    Issue NOAA-EMC#4 - removed references to Theia and Theia scripts

commit 091f4ba
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jan 8 19:37:45 2020 +0000

    Issue NOAA-EMC#7 - missed update to gdas transfer file from GFSv15.2.5 updates

commit 3fd4bcf
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Dec 17 19:12:28 2019 +0000

    GitHub Issue #2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update

commit 5307952
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Wed Dec 11 20:47:44 2019 +0000

    HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera
    @jkhender
    jkhender committed Mar 31, 2020
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Commits on Apr 10, 2020

  1. Merge branch 'feature/gfsv16b' into gmtb_ccpp_hera 

       Squashed commit of the following:

   commit 073e5f64eab5badbd8a30b2ea702ce27159186fe
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Apr 9 16:44:14 2020 +0000

       modified:   arch.sh add external reference to VFRARCH.

   commit 53c818babc7c5e3dadc089823604b58bcb31bf0f
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Apr 9 16:30:04 2020 +0000

       modified:   arch.sh to clean old data under vrfyarch and touch remaining data to
                   prevent them from being removed by the operation system

   commit 44dd4c28609d4e7c24cf87d5f69796ea8f7a6245
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Apr 9 12:00:15 2020 +0000

       Issue #1:  update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11

   commit a8b655c0b543b1a3d94b7bb70130e58c2a747663
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Apr 9 02:50:32 2020 +0000

       modified:   module_base.hera and  module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08

   commit 4c1acf26cac49b9dd26ad404c6547cea1a969b7f
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Apr 9 02:18:43 2020 +0000

       modified:   checkout.sh to point to model tag GFS.v16.0.2, which includes following updates
           https://github.com/ufs-community/ufs-weather-model/pull/100
           * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files
           * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90
           * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time).
           * update esmf lib to esmf801bs08.

   commit 41b68b5b7257a6f5a3ee1c88f3b8d3251b8097a9
   Merge: 556614f5 ad9dd289
   Author: Fanglin Yang <fanglin.yang@noaa.gov>
   Date:   Tue Apr 7 00:15:44 2020 -0400

       Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost

       Wave component workflow updates

   commit ad9dd28990f6ee6727f6dec43d335545c979093e
   Merge: 3b135fe9 556614f5
   Author: henrique.alves <Henrique.Alves@noaa.gov>
   Date:   Mon Apr 6 00:01:32 2020 +0000

       Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1

   commit 3b135fe9b6a2adfd337aa5c59188a3641ca68432
   Author: henrique.alves <Henrique.Alves@noaa.gov>
   Date:   Sun Apr 5 23:54:36 2020 +0000

       Adding ROTDIR path for operationalnco envir

   commit 556614f596f1e3fdb0dca3affe320aaea3650b23
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Sat Apr 4 00:40:20 2020 +0000

       modified:   sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil,
                   background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for
                   reducing surface cold biases.
       modified:   parm/config/config.fcst, tunn on canopy heat storage for slm=1.

   commit 83c546b74d1c8fae22535082dec8cc03d8477ad7
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 18:55:08 2020 +0000

       Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls

   commit 551ae13fcaf35f86580707bba583bc3b825d796b
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 15:52:01 2020 +0000

       Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile

   commit 6c803647fb3c8c14e5da032b0f14add219d74cb5
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 15:39:34 2020 +0000

       Updated KEEPDATA block and added exit 0 to wave j-jobs

   commit 42e08a505263aee0c990417487e7a62d37405d80
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 15:34:38 2020 +0000

       Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files

   commit ddb1b953789b4253d70db9bceb2e9a2d5b6fcc43
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 15:33:12 2020 +0000

       Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files

   commit 6c272f9e0cb13da7481431c60fc5f4c494d8fb87
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 15:06:29 2020 +0000

       Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts.

   commit 6e1e023b2e2d547b3429bd66a724c735db542c74
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 13:26:18 2020 +0000

       emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file.

   commit d5d3701eb32f3a9052d2bb9944bb2a402cd95018
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Apr 3 13:25:54 2020 +0000

       emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file.

   commit 84c8730053c930508bf4ca211b1440ce32f735a1
   Merge: 8ef7dee8 49faf67f
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Apr 2 19:57:12 2020 +0000

       Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost

   commit 8ef7dee8b60cf548b8c0fbe95a57d8a49845ac38
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Apr 2 19:54:07 2020 +0000

       Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs

   commit 4355153d85c4d9a553dc4838659005a791fe12d7
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Apr 1 19:44:37 2020 +0000

       adding hooks and parms for new wave model grids in several scripts.

   commit 49faf67fd401856923947972053395d351330ede
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Mon Mar 30 14:32:42 2020 +0000

       GitHub Issue #1 updated AWIPS parm cards with DZDT

   commit 84c28812d8d681c486132bb02cb9478055ec88b1
   Merge: 7470bfe4 0e0dc873
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Fri Mar 27 18:50:36 2020 +0000

       Issue #1: Merge branch 'develop' at 0e0dc87 into feature/gfsv16b

   commit 7470bfe459fcb28751800b525d9387fbc486b8e3
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Fri Mar 27 18:34:52 2020 +0000

       Issue #1:  maintenance and consistency updates

        * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0

        * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF.  PREFIX_ATMINC defaults to a blank string - no change in current behavior

        * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball

   commit 79b91dc2399609d806b99f0ed5271494d1bab6d0
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Mar 27 04:46:51 2020 +0000

       Adding missing cd fv3gfs.fd back in checkout.sh

   commit 0e0dc873ceff26f9666fc40287ad2457171719c7
   Merge: b133700a 95a63432
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 26 10:54:44 2020 -0400

       Merge pull request #42 from NOAA-EMC/hotfix/viewer

       Issue #41 - Update PRODUTIL paths for WCOSS in viewer

   commit 95a63432f3fbdd8745d0617089485cdc332f57e7
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 26 14:43:44 2020 +0000

       Issue #41 - Update PRODUTIL paths for WCOSS in viewer

   commit b133700a4a65fe5334e5b5522a8c6f83bf0bbd0c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 26 13:01:38 2020 +0000

       Issue #21 - correct syntax for machine if-blocks in setup_expt scripts

   commit c3fbe7970c03aaad8e5b511b9d43931da9382fd3
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Mar 26 12:05:46 2020 +0000

       Adding new grids, changes to modulefiles for poiting to new esmf module

   commit f4ee5098988106037528650ba8a15922150b70af
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 25 20:52:49 2020 +0000

       Issue #21 - remove unneeded logic from partition check

   commit 4acc80f6037a4d0fd43a64e9178e7aadbd6162f5
   Merge: accb6f4b fb1c79f4
   Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com>
   Date:   Wed Mar 25 15:22:51 2020 -0400

       Merge pull request #40 from NOAA-EMC/port2wcoss3p5

       Issue #21 - Add support for WCOSS phase 3.5

   commit fb1c79f4b7136e09c9d35d9d05303116036f58c9
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 25 16:06:54 2020 +0000

       Issue #21 - updated WCOSS phase 3.5 queues

   commit 08a535492952d863f860977f0ab0da4bc79bc931
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 25 14:58:14 2020 +0000

       Issue #21 - add phase 3.5 support

       - add partition option to setup scripts
       - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts
       - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

   commit be21d3f2bc06ef8e7e31edce08756ee6aee36d31
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Mar 24 20:10:07 2020 +0000

       Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing

   commit c4cc28b08ca58007882e9823a68f26c2c5eaf92b
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Mar 24 17:22:55 2020 +0000

       Fix wave config begin and end echos

   commit 20d79d274be862b7147f17cd7654f2c770ce7425
   Merge: 3efe1c23 accb6f4b
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Mar 23 18:19:08 2020 +0000

       Issue #1:  Merge branch 'develop' accb6f4 into feature/gfsv16b

   commit accb6f4b919871221e8037d5f154b157d88d1102
   Merge: 057b2a82 8b51b56f
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Mon Mar 23 14:01:30 2020 -0400

       Merge pull request #39 from NOAA-EMC/feature/verif-tag

       Issue #38 - update EMC_verif-global pointer from VLab to GitHub

   commit 8b51b56f84289d1c01863b61421b21eccd22939c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Mar 23 17:40:18 2020 +0000

       Issue #38 - update EMC_verif-global pointer from VLab to GitHub

   commit 3efe1c23fbe906953f3df4e6e6b43a604505dcf1
   Author: Fanglin Yang <Fanglin.Yang@noaa.gov>
   Date:   Sun Mar 22 16:49:40 2020 +0000

       update arch.sh to remove selected RESTART files

   commit 586d0994aab2348c1deea521b37183ddf0a8f2d7
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 19 14:01:16 2020 +0000

       Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg

   commit f412f2ca8071baa6bd91f641c1fd8102e9271bef
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Mar 19 13:53:34 2020 +0000

       Issue #1:  update EMC_verif-global to tag verif_global_v1.6.0

   commit 94abe6a1caca4724fbc580d58928a6cf74a65590
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 18 19:02:09 2020 +0000

       Fix syntax error in setup_workflow_fcstonly.py

   commit 06ff92be074bac2728055a62ce0fa263a4d13cf6
   Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
   Date:   Tue Mar 17 18:10:37 2020 +0000

       modify job card for tests

   commit a2b76f1d402c8568612dc727ebf36b548748589d
   Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
   Date:   Tue Mar 17 18:10:04 2020 +0000

       modify namsnd TIMSTN

   commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d
   Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
   Date:   Tue Mar 17 18:09:24 2020 +0000

       modify collectives mpmd design

   commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1
   Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
   Date:   Tue Mar 17 18:08:41 2020 +0000

       modify config.resources for postsnd number of tasks

   commit e3945e03031db23dbb8681e3d1034cc07377ae2d
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Mar 16 10:38:07 2020 +0000

       Issue #1:  add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs

   commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Mar 16 10:35:14 2020 +0000

       Issue #1: DA workflow updates for GFS v16 (does not change results)

   commit c728925aaf6f8c2aac170e6987ed34e28e411053
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Sun Mar 15 17:16:56 2020 +0000

       Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts.

   commit 9bc784f708e09e9f5392c662cae2ed51cfb09011
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Sat Mar 14 17:43:00 2020 +0000

       Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS)

   commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Wed Mar 11 17:25:36 2020 +0000

       Issue #1:  update Externals.cfg to GFS v16 components

   commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8
   Merge: 55130516 057b2a82
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Wed Mar 11 17:21:33 2020 +0000

       Issue #1:  Merge branch 'develop' at 057b2a8 into feature/gfsv16b

   commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c
   Merge: 0377d20f 622167d5
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 11 12:00:58 2020 -0400

       Merge pull request #29 from NOAA-EMC/feature/manage_externals

       Issue #3 - Introduce manage_externals as replacement for checkout.sh

   commit 50649e274d2b074f4d3c6f18503b8bb6997a5bde
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Mar 11 03:16:10 2020 +0000

       General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level

   commit 55130516cea5ea67b758b52c9445aca667e1c35a
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Mar 9 13:59:44 2020 +0000

       Add ability to have wave jobs depending on cdump

   commit 622167d5fb3322921a1702639ebccb42da1f5e1b
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 18:20:31 2020 +0000

       Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh

   commit e83b90d50999f64ed5208d94a8cceb8179c9395f
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 17:00:15 2020 +0000

       Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already

   commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 16:30:54 2020 +0000

       Issue #3 - updated README with new manic version

   commit e602cd3d536b55b86b04285aedd5781d8d3a9f82
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 16:27:57 2020 +0000

       Issue #3 - updated link_fv3gfs.sh to adjust wafs links

   commit 830c73f430d70cc516dea419a8969c6fd9fc0910
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 15:21:45 2020 +0000

       Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop

   commit 40084e67810d21366d0e9af6d9937c29aa4965ad
   Merge: f662fffa 0377d20f
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 15:18:52 2020 +0000

       Issue #3 - Merge branch 'develop' into feature/manage_externals

   commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Mar 6 14:05:29 2020 +0000

       Issue #1 - remove gfswave restart archival

   commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Mar 5 18:51:22 2020 +0000

       Issue #1:  update postsnd section of config.resources

   commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Mar 5 18:40:38 2020 +0000

       Issue #1:  update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels

        * parm/config/config.anal - reduce second outer loop iteration count for gfs
        * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files
        * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false)
        * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1
        * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2)

   commit a107109d8fdd0292a3017f26e56863fbb28a63ce
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 5 16:08:23 2020 +0000

       Fixed bug in config.fcst related to extra then

   commit 0de559a088ac670f2b105168988c18ee1b57488a
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Mar 5 15:55:50 2020 +0000

       Issue #1:  update exglobal_fcst_nemsfv3gfs.sh and checkout.sh

        * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer

        * sorc/checkout.sh - update to model tag GFS.v16.0.1

   commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a
   Merge: fa7bca5a 0377d20f
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Mar 5 15:36:50 2020 +0000

       Issue #1:  Merge branch 'develop' at 0377d20 into feature/gfsv16b

   commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94
   Merge: 1b359dbe 25524675
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 5 08:43:16 2020 -0500

       Merge pull request #28 from NOAA-EMC/feature/metplus2

       Issue #8 - add switch for MET+ jobs

   commit 25524675a63e59829655bbd9a09abc4dca246357
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 5 13:31:02 2020 +0000

       Issue #8 - add switch for MET+ jobs

   commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab
   Merge: af73a39f cd67f975
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 5 08:08:57 2020 -0500

       Merge pull request #25 from NOAA-EMC/feature/wave2global

       Feature/wave2global into feature/gfsv16b

   commit cd67f97592227fea0238327dade887d4584300c3
   Merge: c72d7b5b af73a39f
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Mar 5 13:03:10 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867
   Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
   Date:   Wed Mar 4 23:53:41 2020 -0500

       Clean up exwave_post_sbs

   commit 2e738f20930dfd7d5216920ec7cc26774be811f3
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Mar 5 04:03:44 2020 +0000

       Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh.

   commit b7638436b1e737077fbb2dad705e7ed157df261e
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 4 21:02:04 2020 +0000

       Fix to JWAVE_PREP to look back a day for rtofs

   commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 4 19:59:56 2020 +0000

       Adjustments after going through PR review

   commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0
   Merge: 0359d342 31bb7d32
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 4 10:19:36 2020 -0500

       Merge pull request #26 from NOAA-EMC/feature/metplus

       Feature/metplus - refactored MET+ jobs to resolve timing issues

   commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Mar 4 13:03:12 2020 +0000

       Adjust restart_interval if-blocks for DOIAU=YES in configs

   commit 2b337a8f8c900146905915032826faf9e6f07dc0
   Merge: a4daafee e0a1a0ae
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Mar 3 18:31:09 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit a4daafeecaf3fed38e637389ab5f4041b5139a4c
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Mar 3 18:30:58 2020 +0000

       Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data

   commit af73a39fc8ae7868ea9d08081b98f84345fa4f95
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Tue Mar 3 13:44:59 2020 +0000

       Github Issue #1 Updated postsnd.sh

   commit e0a1a0aeb4066ab834fd93a86780196f55a7a447
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Mar 2 18:45:50 2020 +0000

       Fix gdasfcst dep on gldas

   commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129
   Merge: 48ed4c5f 203d1747
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Mar 2 13:41:13 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Mon Mar 2 04:22:02 2020 +0000

       General cleanup. wavepostsbs wall time limit matches gfsfcst walltime .

   commit 4af83a430a8bb58f83d686535d39d9745de9ab6c
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Sun Mar 1 02:51:02 2020 +0000

       Cleaning up prior to merging to gfsv16b

   commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d
   Merge: 4400d7c3 d39ba74d
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Sat Feb 29 18:23:17 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Sat Feb 29 18:23:13 2020 +0000

       Changes to feal with waveprep and wavepost

   commit 203d174798aae0d4e581930fa8f49abb8421f81f
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Sat Feb 29 01:17:57 2020 +0000

       Issue #1:  two GFS v16 DA updates

        * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0

        * parm/config/config.anal - remove REALTIME=NO section since not needed

   commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 28 19:01:02 2020 +0000

       Removed extra forward slashes in wave part of hpssarch_gen.sh

   commit 82889365da44196804b7d751a1c8c5992ca102ea
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 28 18:44:13 2020 +0000

       Added waves to archival

   commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db
   Merge: 9321bdc9 8997f2a2
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 28 13:58:28 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 28 13:39:34 2020 +0000

       Cleanup and added adjustments to other env files

   commit 8997f2a27a45ee018d33abdf1883914a38c88ffd
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Feb 27 14:37:24 2020 +0000

       Issue #1:  check existence of EnKF spread file before adding to HPSS archive list

   commit 2d6620e9b961f290daab1369778644c799bec5cc
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 27 13:45:39 2020 +0000

       rm nemsio utility

   commit 0120cf577df7faf2413e0b585423728ecd62657d
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 27 13:40:45 2020 +0000

       modify config.resources for postsnd ppn=4

   commit 0891840f8f43dccdd81573f2d6513b573de921aa
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 27 13:32:07 2020 +0000

       modify config.resources for postsnd ppn=4

   commit 67e20de5ac6e8f52312bc71adc5419330ebe6542
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Feb 27 04:22:36 2020 +0000

       Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics.

   commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Feb 27 03:47:36 2020 +0000

       Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available.

   commit 7145fd01ffcf3043dd1dea458ae866f208f32633
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 26 19:34:24 2020 +0000

       Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES

   commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 26 18:44:45 2020 +0000

       Fix for missing nth_postsnd in config.resources

   commit 91456a9b7cfc285b78ec083a419592fafe6f75d0
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Wed Feb 26 15:52:32 2020 +0000

       modified config.resources for bufrsnd

   commit 011a393c162a422859b1184e9f32dd50d1d48882
   Merge: d01c3543 8806c9e4
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Wed Feb 26 13:50:49 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit d01c3543e59bbabb491454788f17e818305de6fc
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 26 13:48:26 2020 +0000

       Updates to checkout.sh from feature/gfsv16b

   commit 8806c9e4e3572169146a2ba3605a86680e35287c
   Merge: e87695c8 318d8b46
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Wed Feb 26 13:45:13 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b
       Commit NetCDF parallel reading capability.

   commit 3b5d451aa165dc368c674cd2a71d6786097869e7
   Merge: 88d8abda 318d8b46
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 26 13:43:52 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit e87695c8b151e3c64cafed97ad921849d3998ece
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Wed Feb 26 13:42:41 2020 +0000

       reinstate nemsio utility files for namsio data format

   commit 318d8b46ff7269899db92ae72f68fa1110406a16
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Tue Feb 25 20:17:40 2020 +0000

       Issue #1:  add gldas and esfc to the list of log files to write to HPSS

   commit 6102b6971fc9ee1f5dfc20c98a625b20e7f2cbbc
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:32:21 2020 +0000

       Adding a parallel reading interface

   commit c0b9ddc5dfe0d5dfcf1592fabf295ad951cc20b3
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:31:19 2020 +0000

       adding parallel reading interface

   commit 057b10cc02f66cdede531a04967a2d6a51efb148
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:30:16 2020 +0000

       Clean up un-used variable

   commit 25ac8f0a64ea710e7b8dd55dd3d03cdfd600c671
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:28:59 2020 +0000

       Modify to call parallel reading subroutine

   commit c1a25a5ec5d46d52cd931b5178abba45bfb41345
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:20:26 2020 +0000

       parallelizing gfsbufr.f for reading NetCDF files

   commit b28020f0c03ce54db3022de43ecc0f7119bce6d2
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:17:32 2020 +0000

       modify driver for parallel read test

   commit bce7d9642decf393e2b314e837f557765a6382b8
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 19:14:45 2020 +0000

       modify postsnd resource for parallel read

   commit f89912416cf5347fbcd6e1378aae61e99ffa14ac
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Tue Feb 25 18:59:26 2020 +0000

       remove testing jobs script JGFS_POSTSND_netcdf

   commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b
   Merge: 33c65a19 9d6e8464
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Feb 25 17:49:29 2020 +0000

       Sync merge with feature/gfsv16b

   commit 9d6e8464aa207da41901278c9e5454efd9e475a2
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 25 04:45:44 2020 +0000

       setup_workflow_fcstonly.py failed.
       Updated to get "reservation" from config.base.

   commit 36367563af24402db621179bda139f17d3ca1d44
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Feb 24 20:37:27 2020 +0000

       Issue #1:  update config files for use in GFS v16 real-time and retrospective parallels

   commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4
   Merge: 9a1f79d7 0aa8dacf
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Mon Feb 24 15:37:48 2020 +0000

       Bugfix for creating spectra files in wavepostsbs step

   commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde
   Merge: 8148766c 431c7866
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 21 13:57:55 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 8148766c489057553e20fc42bad494f1ed5aa70c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 21 13:56:56 2020 +0000

       Small fix to exglobal_fcst_nemsfv3gfs.sh

   commit 431c78668c98268cb749397ec8218428104c9687
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Feb 20 15:19:42 2020 +0000

       Issue #1:  remove RESERVATION from archive jobs

   commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Feb 20 14:05:52 2020 +0000

       Remove output_1st_tstep_rst override and add iau_drymassfixer

   commit 36cb42dc5d8985f8402405dce811f04063f572ab
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Feb 20 12:30:28 2020 +0000

       Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b

   commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Feb 20 12:19:11 2020 +0000

       Adding back lost and found EOF in section that creates input.nml

   commit 635d95d58c932909dc6a29c62515c385dc01587a
   Merge: f31de5aa c4454b3a
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 19 20:42:49 2020 +0000

       Additional sync merge with feature/gfsv16b today

   commit f31de5aaa6c915ac8bc1184726bead71dc9157d4
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 19 20:18:23 2020 +0000

       Removing copies of exglobal_fcst that were added erroneously

   commit c4454b3ab2c5fbda7890546f31f2fe38daa5edd9
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Wed Feb 19 16:41:38 2020 +0000

       modified:   sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains
                   updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib
       modified:   scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true.

   commit 31bb7d32181ca84229c3c3374226bbd37784ddc4
   Merge: eb73e520 0359d342
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Wed Feb 19 15:24:42 2020 +0000

       Merge branch 'develop' into feature/metplus

   commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 19 15:05:59 2020 +0000

       Changes to config.resources after wave tests

   commit 24844e403745fb5b292fcde0aae53a3c497aa295
   Merge: 0f2f2b0b c2e99795
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 19 14:03:58 2020 +0000

       Sync merge with feature/gfsv16b

   commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Feb 19 13:36:14 2020 +0000

       Updates to config.wave and scripts/exwave_post_sbs.sh

   commit c2e997959144b2628185b58e5480f25a7cd8852a
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Wed Feb 19 00:42:49 2020 +0000

       Issue #1:  add backup option to fit2obs, update config files

        * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS

        * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block

        * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs

        * parm/config/config.vrfy - add VBACKUP_FITS

   commit ed160c03ff53e10aa0e3d57ac802e8e6fecd54a3
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 18 22:22:10 2020 +0000

       modified:   sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0

   commit c08ebb8a2aca1061272c05643160aebc2a06eac5
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 18 17:22:01 2020 +0000

       modified:   checkout.sh to use
       UPP:       upp_gfsv16_release.v1.0.5
       ufs-util:  release/ops-gfsv16

   commit a6bc7f8ad50a0c7400c17c3d1423e2aefccff2ed
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 18 17:12:17 2020 +0000

       modified:   arch.sh to archive gfs_pgrb2b group into HPSS

   commit 958ee38b6fb9c76056a3045f43dec92a503f48c9
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 14 20:38:53 2020 +0000

       Increasing resources for eupd when C384

   commit db5c593f2c34111a13bddaa1f4f59edcd74c2118
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Fri Feb 14 20:12:00 2020 +0000

       Issue #1:  update modulefiles/module_base.hera to crtm/2.3.0

   commit f662fffa25a99617828e4322bf789978cf523248
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 14 15:57:05 2020 +0000

       Issue #3 - Updated README with new manic tag v1.1.7

   commit 94cd971fb14c4b7204822ca780d6e9dbe945b595
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 14 15:31:32 2020 +0000

       Updates to wave scripts

   commit 4e006dc33fb68febaa33524dfafaa1f0d3282939
   Merge: fcc5a74a a94a44a8
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Fri Feb 14 00:50:00 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

   commit fcc5a74a95d37ef2d7193ec6c0c8e5513a0f3548
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Fri Feb 14 00:48:44 2020 +0000

        	modified:   config.fcst to fix a bug

   commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Thu Feb 13 15:59:06 2020 -0500

       Update README.md

   commit e46b175d8a309010e421ccd54e6d6eb083af3579
   Merge: 4bd0e203 0359d342
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Thu Feb 13 20:38:04 2020 +0000

       Issue #3 - sync merge with develop branch

   commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Thu Feb 13 19:09:56 2020 +0000

       Added EUPD_CYC variable to config.base.emc.dyn

   commit a94a44a82be752f6542b50c8d6ce082f7272dc4c
   Merge: 0f0894bf 0359d342
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Feb 13 18:59:51 2020 +0000

       Issue #1:  Merge branch 'develop' at 0359d34 into feature/gfsv16b

   commit 0359d3425a8710e7b696b94456ec8e54e9a2fd9f
   Merge: 1d9a1f00 bd00cb98
   Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com>
   Date:   Thu Feb 13 09:53:59 2020 -0500

       Merge pull request #19 from NOAA-EMC/feature/remove_theia

       Feature/remove theia

   commit 0f0894bfcc8a25ea921026d911a38e7b726ce638
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Thu Feb 13 14:15:16 2020 +0000

       GitHub Issue #1 removed script  exnawips.sh.ecf (not used)

   commit adabbaf95b32b7292cc0f09447f98773795f2b1e
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 13 00:34:02 2020 +0000

       change netcdf modules

   commit 767b9c33e29aff3470d914edb9289ef8236331ed
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 13 00:32:25 2020 +0000

       remove hardwired libs

   commit be3c324dc1e35f336b1df6f2be8ab335f45f1b9e
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 13 00:31:13 2020 +0000

       Modified modules for parallel_netcdf

   commit 3e3c119d096f5d03082183655d0f5db4e4991951
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Thu Feb 13 00:29:53 2020 +0000

       Added netcdf_parallel modules

   commit 0b25f5b648892a068ac6ae1c30890729576b2c5c
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Wed Feb 12 20:28:27 2020 +0000

         Changes to be committed:
        	deleted:    ../driver/product/driver_WAFS.README
        	deleted:    ../scripts/exgfs_grib_wafs.sh.ecf
        	deleted:    mkwfsgbl.sh

   commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Wed Feb 12 18:00:14 2020 +0000

       Adjusting config.resources for C384

   commit 8bdf2387b1fad22cfa2da37a7428406a847d2362
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Wed Feb 12 17:33:53 2020 +0000

       Reducing npe_eobs from 400 to 100

   commit 648479c086776b0c7b4d24b4052130d48dfaa64a
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Wed Feb 12 15:56:39 2020 +0000

       Issue #1:  add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3

   commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Wed Feb 12 14:46:26 2020 +0000

       Removing gefs from checkout.sh and link_fv3gfs.sh

   commit fc0b624223baa54315e7ad52f48b689fff29bccb
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Wed Feb 12 02:37:36 2020 +0000

       modified:   exglobal_fcst_nemsfv3gfs.sh -- bug fix

   commit 97e34f9728ae3bda52fe636994c91453b5cccfb4
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 11 17:47:34 2020 +0000

       removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh

       JCAP_STP=${JCAP_STP:-$JCAP_CASE}
       LONB_STP=${LONB_STP:-$LONB_CASE}
       LATB_STP=${LATB_STP:-$LATB_CASE}

   commit 60098fc7238b35f461ec9aa8fabd924fb09372ce
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 11 17:34:40 2020 +0000

       1. modified:   parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made
                      by the physics group. More development is required to use the canopy heat storage parameterization.

       2. modified:   scripts/exglobal_fcst_nemsfv3gfs.sh to
                      1) change the default of  lheatstrg to ".false."

                      2) for ensemble forecast, change
                        &nam_stochy
                         ntrunc = $JCAP_STP
                         lon_s = $LONB_STP
                         lat_s = $LATB_STP
                       EOF

                       to
                         &nam_stochy
                         /
                         EOF

                       Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on,
                           I recommend removing ntrunc, lat_s, and lon_s from the namelist.  I have fixed the bug that
                           forced the spectral resolution of the random patterns to be related to the number of mpi tasks.
                           Now the code calculates the appropriate truncation for a given length scale.
                           It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same.

   commit ababd08e676f45524ec616e60a0290c26d3b1795
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Tue Feb 11 16:28:12 2020 +0000

       Updated data card grib2_awpgfs102.003

   commit eef10607bedf12153580d85d5a7952ea90c8b198
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 11 16:14:29 2020 +0000

       resort back to older w3emc lib since w3emc_para does not support mersenne_twister
        	modified:   modulefiles/gfs_bufr.hera
        	modified:   modulefiles/gfs_bufr.wcoss_dell_p3

   commit 8fe97ac689aebb2243b6e69cbf7015e636d68852
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 11 15:45:33 2020 +0000

       	modified:   modulefiles/gfs_bufr.hera and   modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules

   commit 78a7294eb1937758fa81f72cc5045d3d680a07c6
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 19:29:15 2020 +0000

       Fixed missing fi in checkout.sh

   commit 15628bda0621187949204d0d9af4d901e205495d
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 19:21:39 2020 +0000

       Change fv3gfs checkout to develop branch of ufs-weather-model

   commit 631820beca07522faedccc47d7415c4b6b250273
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 19:08:30 2020 +0000

       Changing checkout.sh to Henrique's fork branch gfsv16_wave

   commit cc742b672af73931999bddf115bc32f07ed69f87
   Merge: ba63c4f8 1d9a1f00
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Feb 10 17:19:58 2020 +0000

       Issue #1:  Merge branch 'develop' at commit:1d9a1f0 into feature/gfsv16b

   commit a518485866536102312c477926ae42a59d5e561e
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 17:02:22 2020 +0000

       Changing fv3gfs.fd checkout back to gfsv16_updates

   commit c75d35b6802592b17640fecace38d9103a14b1bc
   Merge: 2a46ee2e ba63c4f8
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 16:44:53 2020 +0000

       Sync merge with feature/gfsv16b

   commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Mon Feb 10 15:42:35 2020 +0000

       Updates for wave and fcst scripts, as well as config.wave

   commit ba63c4f83955bfc38bc3f2fbd9f8c6447630a803
   Merge: fc2144e6 75a9fb5d
   Author: Fanglin Yang <fanglin.yang@noaa.gov>
   Date:   Sat Feb 8 20:35:14 2020 -0500

       Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf

       Feature/gfsv16b paranetcdf

   commit 75a9fb5d4dd6d4ef91bdee93769031465ddd57e9
   Merge: a2932c5b 6f256b4f
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Sun Feb 9 01:22:29 2020 +0000

       Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf

   commit a2932c5be934fb45416c92caa01f0fa3df4829d1
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Sun Feb 9 01:21:52 2020 +0000

        	modified:   parm/config/config.base.emc.dyn
        	modified:   parm/config/config.base.nco.static

   commit 6f256b4f7aadb9913cd78962e19dcabcf7ba49e4
   Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov>
   Date:   Fri Feb 7 20:07:24 2020 +0000

       Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file

   commit eb0681751af6b850e99c880c11343af10000d54d
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Fri Feb 7 16:20:43 2020 +0000

        	modified:   sorc/checkout.sh update ufs_util repo

   commit b9feca17a5e566d75995049ba8e1497eb205b96d
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Fri Feb 7 15:03:52 2020 +0000

        	modified:   ../../modulefiles/module_base.hera
        	modified:   config.anal        control ABI and AHI data usage
        	modified:   config.resources   updates based on pull reviews
        	modified:   ../../sorc/gaussian_sfcanl.fd/makefile.sh  use parallel netcdf

   commit eb73e520716215c3f11cc4cdfce3831408221766
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Fri Feb 7 14:04:37 2020 +0000

       Update EMC_verif-global checkout to verif_global_v1.5.0

   commit bd00cb9812c5fb400ba4399d183b2198b8e80372
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Fri Feb 7 13:41:05 2020 +0000

       Issue #4 - bug fix in getic.sh for v15

   commit 1c85197d7a1beb34f2e3a52969d631d42003e6eb
   Merge: 67dae409 1d9a1f00
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Fri Feb 7 13:27:18 2020 +0000

       Issue # 4 - Sync merge branch 'develop' into feature/remove_theia

   commit 1d9a1f00b73cb3852d352e9a41a15651a99fb656
   Merge: 3ed9267b bdbecaa7
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Fri Feb 7 08:11:21 2020 -0500

       Merge pull request #18 from lgannoaa/exception_handling

       Exception handling

   commit 85deaf78b86184f9b52afe5d68b370ba640c152b
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Feb 6 19:16:18 2020 +0000

       Updated resource configs based on C384 and C768 tests

   commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e
   Author: Kate Friedman <kate.friedman@noaa.gov>
   Date:   Thu Feb 6 11:55:31 2020 -0500

       Update README.md

   commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Thu Feb 6 16:03:11 2020 +0000

       Issue #3 - reduce hashes down to minimum 8 characters

   commit 92d07793ce4be5ac1e12aedb536ace89ec6fcc7b
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Feb 6 15:28:15 2020 +0000

       Update to use parallel netcdf libs
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3
        	modified:   modulefiles/fv3gfs/gaussian_sfcanl.hera
        	modified:   modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3

   commit a6a28943d08089d96dcf3ea7953ffaf9877e3caa
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Feb 6 15:10:40 2020 +0000

       Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and
       w3emc_para 2.4.0 on Dell and Hera

   commit cf1c0a5cfec92cebaf648a09f42da435750154b6
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Thu Feb 6 13:43:17 2020 +0000

       Issue #16:  Update EMC_verif-global to tag verif_global_v1.5.0

   commit 41ca86bc4001549b98d6b6594288c9752215a1f3
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Feb 6 04:19:11 2020 +0000

        	modified:   parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf

   commit 61b72ba02f920b4817ee199d9cae685e2e3c2234
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Thu Feb 6 01:10:06 2020 +0000

        	modified:   config.resources

   commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Feb 4 19:11:42 2020 +0000

       Wave changes for running with IAU on

   commit 3c0ebdde3307741f88e6ecef4f59faaf5efdd5ad
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Tue Feb 4 17:11:56 2020 +0000

        	modified:   modulefiles/module_base.hera and   modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib
        	modified:   parm/config/config.efcs and  parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts

   commit f89bafe55aa0b15ae306dbaff8d97cbd17dc27c5
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Feb 3 14:09:33 2020 +0000

       Issue #16:  update DA checkout to feature/parallel_ncio

   commit bad2fc1a43a4df12f3f57c4da9e7612402885cd4
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Mon Feb 3 05:01:43 2020 +0000

        	modified:   parm/config/config.fcst
        	modified:   parm/config/config.fv3

   commit 183aac6be0ff71d8368ee139695aeca7caf72464
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Mon Feb 3 04:10:36 2020 +0000

       Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in
       the config files of in v16rt2.  Made ertain adjustment and cleaned up certain parameters in a few scripts to
       remove redundance.

        	modified:   parm/config/config.anal
        	modified:   parm/config/config.base.emc.dyn
        	modified:   parm/config/config.efcs
        	modified:   parm/config/config.eobs
        	modified:   parm/config/config.eupd
        	modified:   parm/config/config.fcst
        	modified:   parm/config/config.fv3
        	modified:   parm/config/config.gldas
        	modified:   parm/config/config.post
        	modified:   parm/config/config.resources

   commit 9d5e0a0348ae7b825629bc4c601b8ee8e726418d
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Sun Feb 2 19:04:59 2020 +0000

       Github Issue #16

       1. add options to workflow scripts to use parallel netcdf for I/O.
          The application varies with model resolution and computing platform.
          See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings.

       2. Update UPP to upp_gfsv16_release.v1.0.1

        	modified:   modulefiles/module_base.hera
        	modified:   modulefiles/module_base.wcoss_dell_p3
        	modified:   parm/config/config.fcst
        	modified:   scripts/exglobal_fcst_nemsfv3gfs.sh
        	modified:   sorc/checkout.sh
        	deleted:    parm/config/config.resources.C96

   commit 3a66788620477dd3159fe9633a860c799f421eee
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Sun Feb 2 05:17:40 2020 +0000

       The following files are no longer used
        	deleted:    README.iau
        	deleted:    config.anal.iau
        	deleted:    config.base.emc.dyn.iau
        	deleted:    config.efcs.iau
        	deleted:    config.eobs.iau
        	deleted:    config.eupd.iau
        	deleted:    config.vrfy.iau

   commit fc2144e64bedc1f7fc7bd302e42baa94bfe06e7f
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:09:00 2020 +0000

       issue #15 Remove station height adjustment

   commit 72cb96233fb636b83ca9f339e23955629c97b82d
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:08:20 2020 +0000

       issue #15 Porting bufrsnd to Hera

   commit 0799ecd1922652d3d17e88dae62fea1c6d8a96e3
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:08:02 2020 +0000

       issue #15 Porting bufrsnd to Hera and remove height adjustment

   commit a0ac43a8f1541ae47f156442a303689e5d74a9ec
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:07:34 2020 +0000

       issue #15 Porting bufrsnd to Hera and remove height adjustment

   commit 85dc2f2486f841e7ad4785e5170c2edd2fbba35e
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:04:28 2020 +0000

       issue #15 Porting bufrsnd to Hera

   commit 26d52df758693bde55b047bfb874df4439c6d57a
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 16:03:20 2020 +0000

       issue #15 Modofy driver for test runs

   commit 0e34bc5f4d38d742a11e3275ee560708c417c37f
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 31 14:53:37 2020 +0000

       port v16b bufrsnf to Hera

   commit 87d3d18c291af5543de72e38e8dfe310223e1e1e
   Author: fanglin.yang <fanglin.yang@noaa.gov>
   Date:   Fri Jan 31 03:53:20 2020 +0000

       modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian

   commit 50b70215096dbc87e0484ed0eea9572238c37432
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Jan 30 14:55:48 2020 +0000

       Resource adjustments and fix for restart copying in exglobal

   commit bdbecaa7220f2462cc75e802570845809ebcfc75
   Author: Lin.Gan <lin.gan@noaa.gov>
   Date:   Wed Jan 29 15:15:52 2020 +0000

       Display exception handling message for individual package with location of the log file

   commit 85b254d8e65318adaeef87ae7187218de59f94c5
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Jan 28 21:18:35 2020 +0000

       Adjusting resources for wave component

   commit 3f858be34da7134a071762376f4c4e69ea73f4a0
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 20:43:02 2020 +0000

       Further adjustment to config.efcs for restart_interval for cold start SDATE

   commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b
   Merge: 9944f2fe 3fda3e35
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 20:26:10 2020 +0000

       Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global

   commit 9944f2fe15576f0b401996fefe3c910888708e0d
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 20:25:59 2020 +0000

       Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update

   commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c
   Merge: cf008631 3ed9267b
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 15:24:37 2020 +0000

       Merge branch 'develop' into feature/manage_externals

   commit cf0086311daaf62ee33df010946d0a0ddc5bc400
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 15:23:14 2020 +0000

       Issue #3 - remove copy of manage_externals under util and add README.md file

   commit 3fda3e359f66611c77a97ca9c30a6204a36077c3
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Jan 28 14:18:47 2020 +0000

       Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3

   commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c
   Merge: 99b19f18 b3d88593
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 13:58:16 2020 +0000

       Sync merge with feature/gfsv16b

   commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 28 13:54:46 2020 +0000

       Disabling additional wave jobs for later implementation

   commit c12e87987113fa6f4b543bc0dae61d4259703c03
   Author: Lin.Gan <lin.gan@noaa.gov>
   Date:   Mon Jan 27 19:38:19 2020 +0000

       Implement exception handling in build_all script

   commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16
   Author: Kate.Friedman <Kate.Friedman@noaa.gov>
   Date:   Mon Jan 27 19:06:17 2020 +0000

       Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

   commit b3d885930adfc07c67bc8fbe146533868f96aba8
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Jan 27 17:54:31 2020 +0000

       Issue #1:  update gldas workflow dependency to improve parallel throughput

   commit e216205aec6f481b4e96c8707d485dd2eacfb0e7
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Mon Jan 27 00:01:14 2020 +0000

       Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model

   commit 4db98e694624b62e45417b3bb6c7c771f633cb42
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Fri Jan 24 17:18:14 2020 +0000

       Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1

   commit 4d5713d3983c6cc6a8e497e892760752e09f15a0
   Author: Lin.Gan <lin.gan@noaa.gov>
   Date:   Fri Jan 24 15:51:28 2020 +0000

       Testing github commit

   commit 786806f3cd5d858615f3f74dec78891a2189ee79
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Fri Jan 24 15:04:16 2020 +0000

       Missed file format updates in a few places in config.metp

   commit 7d0f783a41d8f1c50e9251b54884410e0bb7ad1a
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Fri Jan 24 14:41:02 2020 +0000

       Issue #1 - GFS v16 updates for MOS, checkout, and archive

        * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos
        * sorc/checkout.sh - check out new fv3gfs branch and UPP tag
        * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs

   commit d0a3b53c8117676c351c50287d4583951c94d42c
   Author: Lin.Gan <lin.gan@noaa.gov>
   Date:   Fri Jan 24 14:30:29 2020 +0000

       init commit for exception handling branch

   commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Fri Jan 24 14:07:29 2020 +0000

       Update EMC_verif-global tag to verif_global_v1.4.1

   commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9
   Merge: bc07de02 09e68b48
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Jan 23 20:00:34 2020 +0000

       Sync merge with feature/gfsv16b

   commit bc07de02af5743194cb9203d0d36e62e9a25b223
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Jan 23 19:43:12 2020 +0000

       Fixed wavepostsbs dependencies

   commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Thu Jan 23 15:04:20 2020 +0000

       Turn off cplwav in efcs config and adjusted dependencies for fcst job

   commit 0ea809c208ce606c957eed4d346a3828d8186010
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Thu Jan 23 13:29:56 2020 +0000

       Update file format variable in config.metp of online archive files

   commit b886c848a60871a86bb0b45d024a34368ad1d898
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Jan 22 21:01:34 2020 +0000

       Change to base config and update to wave dependencies

   commit 154b118a7808bfa60abe0620e4bee21cb4faabee
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 22 03:37:24 2020 +0000

       Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug.

   commit 0edcb211586f1f96d01f172215568fa7eee3a7a2
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Tue Jan 21 20:15:14 2020 +0000

       Several changes to change the sirectory name from  to  etc. Updates to wavepostsbs.

   commit c0d7179f34837e40db9ccb1b941ad9f312283a6e
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Tue Jan 21 16:37:16 2020 +0000

       Add updated env machine files for gfsmetp

   commit 82e690717d72c7b021c637270108f4bacfb6816d
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Tue Jan 21 16:29:23 2020 +0000

       Update config.resources for gfsmetp

   commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Tue Jan 21 16:19:31 2020 +0000

       Update EMC_verif-global tag checkout to 1.4.0

   commit 6872f79f3f9052377ff863da1bbac482548ee0ce
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Tue Jan 21 16:14:25 2020 +0000

       Add rocoto METplus job script

   commit 9c94156670bd810561bd2a699648afb946511ea9
   Author: Mallory Row <mallory.row@noaa.gov>
   Date:   Tue Jan 21 16:09:13 2020 +0000

       Changes to setup_workflow.py for gfsmetp metatask

   commit 09e68b4834b0b54552ef0ae3829a41063200fe5f
   Merge: a49e4e54 3ed9267b
   Author: russ.treadon <Russ.Treadon@noaa.gov>
   Date:   Mon Jan 20 22:05:53 2020 +0000

       GitHub Issue #1

       Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b

   commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Fri Jan 17 17:29:09 2020 +0000

       ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py

   commit 80f13fb4b785fbde8e925cfb6deb547297f34e70
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Jan 17 03:29:35 2020 +0000

       Removing underscore from COM wave directory names

   commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Fri Jan 17 03:08:41 2020 +0000

       Changing back waveprep to include ice and currents by default

   commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Thu Jan 16 19:43:26 2020 +0000

       Updating post sbs script to copy station files to correct directory.

   commit a49e4e5403b1e16025b2a5890cef3de22627119a
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Thu Jan 16 14:59:08 2020 +0000

       Added build script for gfs_util

   commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 20:48:11 2020 +0000

       Adding block sourcing config files into wave j-jobs

   commit b736f8315497bfc29fd77faa9d98bf558ddea919
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Jan 15 20:40:16 2020 +0000

       Removed config sourcing from rocoto job scripts

   commit 4f6840b25d85152ea7393a8959619bb4caab9d67
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 20:38:41 2020 +0000

       Removing dependency on log file for wave post sbs

   commit 429c409799f1999babbfb3653e6f03be66f8fec3
   Merge: 3f685fd3 a6905174
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 20:35:24 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 3f685fd3423add0ba2cfb7c3115a674891c44e55
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 20:29:58 2020 +0000

       Reinstating Ratkos NO NO in build_fv3.sh

   commit 8f48844906f851a41db742f7686f7e7cae6b95c0
   Merge: 5eeaffa1 7c595189
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 20:12:52 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

   commit a69051742c5edd0e4d34d178329fc24cacede78a
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Wed Jan 15 20:12:20 2020 +0000

       Adding supplemental config source to JGLOBAL_FORECAST for wave

   commit 5eeaffa1c3f4e35fe067b7e229f16f93574bcb86
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 20:12:08 2020 +0000

       Updated GFS drivers

   commit 7c595189e8c671a7b2eb6363d82020fb9ed58c13
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 20:09:54 2020 +0000

       Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK

   commit 1f5c593705df384608b1f1dd84df9114d5d8a812
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 19:59:27 2020 +0000

       Removing KEEPDATA from JWAVE_POST_SBS

   commit 5d2f2a21947dfb00762b1085fd267ca959b7fea6
   Author: Boi Vuong <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 19:50:00 2020 +0000

       Github Issue #1 modified rocoto gempak.sh

   commit baa06afcecef64faad51bfac3b4fd2c064df3fb5
   Author: Henrique Alves <henrique.alves@noaa.gov>
   Date:   Wed Jan 15 19:32:06 2020 +0000

       Changes to update sbs post and reconciling parameters for output post data.

   commit 8d430ceeac22bb8943bdf2052b85cccc9b621440
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 16:28:13 2020 +0000

       GitHub Issue #1 Updated ush,gempak,jobs and docs

   commit 53f719f63f569bd061bd3cfd3b63d5040a962dea
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 14:19:46 2020 +0000

       GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f

   commit 8b94a2d6caad3bc5eebfe69bffc5224bebd1856a
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 14:15:16 2020 +0000

       GitHub Issues #1 Updated some gfs driver

   commit ed2317a953992974dc2e61517cfe3d22d3c2d75f
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Wed Jan 15 05:10:51 2020 +0000

       Updated GFS driver

   commit 3ed9267b2f540694e957ee33a746f00857a5a1a2
   Author: kate.friedman <kate.friedman@noaa.gov>
   Date:   Tue Jan 14 19:32:36 2020 +0000

       Issue #10 - mid-year update to bufr station list (develop)

   commit f59fc0c4550a5e8617fb70ca150e91a65de89e18
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Mon Jan 13 20:03:34 2020 +0000

       GitHub Issue#1 Revert parm card for AWIPS grid 211

   commit 21feab285859881814509d75c794bc4ae4f74a3b
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Fri Jan 10 22:00:38 2020 +0000

       GitHub Issue #1 Updated AWIPS grid 211

   commit e292d96010dc1e63f28d2c9d95c5e61776abe0dd
   Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
   Date:   Fri Jan 10 21:12:36 2020 +0000

       GitHub Issue Updated AWIPS parm card grid#211

   commit fcf2d09159f80142364fad616661014e434b2a89
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 10 20:55:57 2020 +0000

       modify gfs_bufr.sh for generalization

   commit 528cde1998fa6b341794f4ad15820e8cbc517568
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 10 20:55:05 2020 +0000

       modify exgfs_postsnd.sh.ecf

   commit 0b5a056b7c089e428806ceecb36ae0ddd0535060
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 10 20:40:21 2020 +0000

       Addd 25 bufr stations and all station j,i

   commit 349c299740b5e1d022faa2d17aa6aa05ed8d7165
   Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
   Date:   Fri Jan 10 20:36:57 2020 +0000

       add module nemsio/…
    @jkhender
    jkhender committed Apr 10, 2020
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Commits on Apr 13, 2020

  1. updated Externals.cfg with tags in checkout.sh for FV3GFS and EMC_Post

    @jkhender
    jkhender committed Apr 13, 2020
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  2. - changes to add CCPP changes to exglobal forecast script

    @jkhender
    jkhender committed Apr 13, 2020
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  3. - add GFS_v16beta and GSD_noah CCPP suites

    @jkhender
    jkhender committed Apr 13, 2020
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  4. - added sorc/aeroconv.fd to Externals.cfg file 

    - added script to extract INPUT/ and thirdparty/ sub-directories under aeroconv.fd
    @jkhender
    jkhender committed Apr 13, 2020
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Commits on Apr 14, 2020

  1. - added aeroic task to setup workflow python scripts

    @jkhender
    jkhender committed Apr 14, 2020
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Commits on Apr 21, 2020

  1. - updated GSI tag in Externals.cfg 

    - added CCPP_SUITE, HPSS_PROJECT, ATARDIR to setup_expt* python scripts and config.base.emc.dyn
- changed path for Thompson lookup tables from $FV3INP to $FIX_AM
- add _jkh directories for gsi.fd and fv3gfs.fd with changed files needed for running cycling
  with Thompson MicroPhysics and reading Thompson lookup tables with threads>1
- added GSD-specific experiment setup python scripts
    @jkhender
    jkhender committed Apr 21, 2020
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  2. - add comment when runnning with 20 ensemble members to jkhNOTES

    @jkhender
    jkhender committed Apr 21, 2020
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Commits on Apr 22, 2020

  1. - backed out adding CCPP_SUITE, ATARDIR, and HPSS_PROJECT to setup_ex… 

    …pt* scripts

- added setting of variables in config.base.emc.dyn
- removed config.base_emc and config.base_gsd from repository
    @jkhender
    jkhender committed Apr 22, 2020
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  2. updated jkhNOTES

    @jkhender
    jkhender committed Apr 22, 2020
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  3. changed sorc/aeroconv directory name to sorc/aeroconf.fd

    @jkhender
    jkhender committed Apr 22, 2020
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Commits on Apr 24, 2020

  1. Merge remote-tracking branch 'upstream/gmtb_ccpp_hera' into feature/ccpp

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Apr 24, 2020
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Commits on Apr 30, 2020

  1. - remove modular forecast scripts and obsolete exglobal script

    @jkhender
    jkhender committed Apr 30, 2020
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Commits on May 1, 2020

  1. modified name of diag_table when running GSD_noah suite

    @jkhender
    jkhender committed May 1, 2020
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Commits on May 4, 2020

  1. added new diag table for DA when running GSD_noah suite

    @jkhender
    jkhender committed May 4, 2020
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Commits on May 12, 2020

  1. corrected setting of effr_in to .true. for GSD suites

    @jkhender
    jkhender committed May 12, 2020
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  2. removed extra files

    @jkhender
    jkhender committed May 12, 2020
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Commits on Jun 18, 2020

  1. -- set DA diag table to diag_table_da_gsd when running GSD_v0 or GSD_… 

    …noah suites

-- set radiation and LSM values differently for GSD_v0 and GSD_noah suites
    @jkhender
    jkhender committed Jun 18, 2020
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  2. - made change for contrib modules

    @jkhender
    jkhender committed Jun 18, 2020
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Commits on Jun 25, 2020

  1. corrected syntax error and made all if CCPP_SUITE statements consistent

    @jkhender
    jkhender committed Jun 25, 2020
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Commits on Jun 26, 2020

  1. revert config.nsst to original values and add if statements for GSD s… 

    …uites
    @jkhender
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  2. Merged with 26Jun feature/gfsv16b branch 

    Corrected setting of nwat for Thompson MP in config.fcst

Squashed commit of the following:

commit 28b1faf
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:31:18 2020 +0000

    modified:   config.vrfy to add
        elif [ $machine = "HERA" ] ; then
            export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

commit 61f4a52
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:21:33 2020 +0000

    corrected a typo in  hpssarch_gen.sh
    -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
    +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

commit b10a930
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 25 20:25:30 2020 +0000

    modified:   config.vrfy to point a different syndat directory on Hera
           export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
           export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

commit b8192e5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 25 18:20:01 2020 +0000

    Issue #1:  HPSS archive and MOS script changes

     * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

     * add ensemble resolution analysis to HPSS gdas tarball

     * allow variable range to be externally set in run_gfsmos_master scripts

commit e599c36
Merge: 99277ae 1e56edd
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Jun 24 14:16:22 2020 -0400

    Merge pull request NOAA-EMC#93 from JessicaMeixner-NOAA/bugfix/exiterr

    fix for exiting properly with error for wave prep/init scripts

commit 1e56edd
Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Date:   Wed Jun 24 12:36:53 2020 -0500

    fix for exiting properly with error for wave prep/init scripts

commit 99277ae
Merge: 14dd3c9 4f8d5a5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c9
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues NOAA-EMC#136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue NOAA-EMC#152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002
Merge: df89cc8 dd599ea
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599ea
Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df89cc8
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28
Merge: 1dd83b8 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

commit 71d7141
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b8
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d878269
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621
Merge: 22b735d 295cd05
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 22b735d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 12 20:06:49 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

    output cloud ceiling height and instant total cloud fraction.
    output instant cloud fraction at low/mid/high cloud layer.
    correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
    output radar reflectivity at 1/4 km above ground and model layer 1/2.
    output mixed layer CAPE/CIN.
    Remove simulated GOES-12 brightness temperature from gfs product.
    Add the bug fix of initializing DBZI from Ruiyu.

commit 10ce1d4
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Jun 11 18:42:22 2020 +0000

    Issue #1 - Hotfix to update anaconda module contrib path on Hera

commit 58d1139
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit 4405a2c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 10 14:36:03 2020 +0000

    Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

commit fc3066c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow

commit 9f2e4ec
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:34:07 2020 +0000

    Issue #1:  correct typo in scripts/exwave_prep.sh

commit 5a8b8f2
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:15:31 2020 +0000

    Issue #1:  check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS

commit a7306aa
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sun Jun 7 23:22:53 2020 +0000

    modified:   jobs/rocoto/post.sh
       wait for 5 minutes if forecast history file does not exist before exit

    modified:   modulefiles/module_base.hera
       use GV's temporal build of  netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA

    modified:   parm/config/config.base.emc.dyn
       add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave

    modified:   parm/config/config.fcst
       -- fix a bug related to setting npe_wav for gfsfcst.
           if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi
       -- set  io_layout="4,4" for writing gfs restart files

    modified:   parm/config/config.wave
       set WAVE restart frequency based on restart_interval_gfs (by H. Alves).

commit 1082885
Merge: 968b986 bf5a5c4
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 20:26:47 2020 -0400

    Merge pull request NOAA-EMC#83 from NOAA-EMC/feature/gfsv16b_restart

    revive GFS forecast break-point restart capability with IAU turned on

commit bf5a5c4
Merge: b27a01d 968b986
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 23:36:52 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 968b986
Merge: 9b36cfd dc512dd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:20:53 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 9b36cfd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:12:56 2020 +0000

    Unify output path in gfs_bfr2gpk.sh

commit 7675368
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:11:23 2020 +0000

    remove station elevation adjustment to T,Q and evaporation bug fix

commit dc512dd
Merge: a7b25a3 987c32a
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 12:55:33 2020 -0400

    Merge pull request NOAA-EMC#82 from NOAA-EMC/feature/gfsv16b_wavehera

    Adjustment to wave workflow for running wave component on Hera

commit 987c32a
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Thu Jun 4 12:08:05 2020 -0400

    Updating checkout to ufs-weather-model GFS.v16.0.5

commit a7b25a3
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Thu Jun 4 14:59:22 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0

commit 0acee67
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 3 20:10:09 2020 +0000

    Issue #1:  remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github

commit b27a01d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 16:58:29 2020 +0000

    modified:   parm/config/config.fcst
    modified:   scripts/exglobal_fcst_nemsfv3gfs.sh

    GFS forecast restrat capability from a breakpoint is no longer working
    with IAU turned on.  This function has been overhauled to make it more
    general and works for cases with and without IAU

commit ba89548
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Wed Jun 3 09:59:35 2020 -0400

    Update JWAVE_PREP

    Removing lines using for testing presence of files while debugging.

commit bb79d7a
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed Jun 3 02:45:33 2020 +0000

    Fixing a few minor bugs in wave_tar.sh after testing on WCOSS

commit 8dc2e25
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 01:41:18 2020 +0000

    add new file:   run_gfsmos_master.sh.hera

commit 3393cac
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu May 28 00:01:51 2020 +0000

    Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep.

commit 32c5f29
Merge: 49abb90 e87b5a1
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:40:34 2020 +0000

    Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera

commit 49abb90
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:36:12 2020 +0000

    Adding comment indicating how to regenerate cdo interpolation weights.

commit e87b5a1
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed May 27 02:01:57 2020 +0000

    JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera.

commit 70d7131
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:39:33 2020 +0000

    Issue #1:  remove "_break" from commented out lines in config.anal and config.prep.  "_break" will cause failue if line active

commit 914cb8d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:37:27 2020 +0000

    Issue #1:  correct typo in parm/config/config.anal

commit 2e12e63
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 19:18:57 2020 +0000

    Issue #1:  update config.anal logic to point ABIBF at the correct GDA directory

commit 38cd821
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 18:04:59 2020 +0000

    Issue #1:  update config files

     * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612)

     * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post)

     * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error

commit 0dff61f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 25 03:08:27 2020 +0000

    modified:   config.fv3 to reduce tasks assigned to the WAVE component.  70 tasks at C768 is adequate for wave.

commit 20ef779
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Fri May 22 19:52:55 2020 +0000

    Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera

commit e248236
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri May 22 15:23:59 2020 +0000

    modified:   config.fcst to set
    if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then
    ...

    lheatstrg=".false."

commit 96460e6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 22 13:02:06 2020 +0000

    Issue #1:  replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files

commit 7222f84
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu May 21 14:09:36 2020 +0000

    modified:   checkout.sh to check out modle tag GFS.v16.0.4. changes include:
           1.  Remove constraints on mixing length and background diffusitivity over inversion layers on land
           2.  Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce
               cold bias in the lower tropospehre
           3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in
              the upper atmospehre.

commit 4fa08a7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed May 20 01:20:21 2020 +0000

    modified:   HERA.env to add
        export CFP_MP="YES" # For analdiag with SLURM

commit 9f7df9d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 18 15:06:19 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_release.v1.0.8
       1) Add configuration for Orion.
       2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset.
       3) Remove SPFH at isobaric levels from pgrb2b dataset.

commit 5e4a133
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri May 15 13:08:25 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2

commit 4291349
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue May 12 03:05:17 2020 +0000

    modified:   checkout.sh to check out gldas_gfsv16_release.v1.2.0.

commit 0c0614c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 8 18:29:07 2020 +0000

    Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources

commit a601acd
Author: emc.glopara <emc.glopara@noaa.gov>
Date:   Fri May 8 04:17:27 2020 +0000

     updated  config.vrfy to point to the fit2obs version that supports reading netcdf history files
        export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun"
        export PREPQFITSH="$fitdir/subfits_hera_slurm"

commit ad86a55
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Wed May 6 15:28:49 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1

commit 20572b5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 1 19:08:23 2020 +0000

    Issue #1:  update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates

commit 20baab7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Apr 29 18:49:05 2020 +0000

    modified:   checkout.sh to check out model tag GFS.v16.0.3
                In Sfc_diff.f, a bug was introduced when the surface layer scheme was
                updated last time to reduce 2-m temperature cold biases.   The bug only
                has impact over sea-ice points, where momentum and thermal roughness
                are nevertheless very small.

commit af63464
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Apr 28 18:18:44 2020 +0000

    modified:   qctropcy.f by Qingfu Liu
                A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr)
                save the first and last storm ID used. If the FORTRAN code finds that the
                storm ID has been used in the current hurricane season, the code will
                change the storm ID by adding 1 to the original storm ID. The fix is to
                skip the change of the storm ID.
                See also NOAA-EMC#63
    @jkhender
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Commits on Jun 29, 2020

  1. revert paths for HOMEobsproc_prep and HOMEobsproc_network since updat… 

    …ed paths do not exist on hera

    export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16/obsproc_prep.iss70457.netcdfhistory_new"
    export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16/obsproc_global.iss71402.supportGFSv16"

  (do not exist on hera)
    export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16b/obsproc_prep.iss70457.netcdfhistory"
    export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16b/obsproc_global.iss71402.supportGFSv16"
    @jkhender
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  2. comment out setting of io_layout in config.fcst

    @jkhender
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Commits on Jul 1, 2020

  1. updated files in jkh directories with current versions for GSI and fv… 

    …3gfs
    @jkhender
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Commits on Aug 7, 2020

  1. updated diag tables for GSL 

      moved 4D variables to gfs_dyn
   ( refl_10cm,nwfa,nifa,qc_bl,cldfra_bl,el_pbl,qke )
    @jkhender
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  2. save field_table_gsd as a file instead of link

    @jkhender
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Commits on Sep 22, 2020

  1. Merge feature_gfsv16b into feature_ccpp for testing

    @lgannoaa
    lgannoaa committed Sep 22, 2020
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Commits on Sep 23, 2020

  1. As requested from management, point ufs-weather-model to development: 

    b8c5c22
git submodule
 f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03)
 6bc61df FV3 (heads/develop)
 9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop)
 96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8)
 ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics
(ufs-v1.0.0-70-gffdd19b)

Remove aerosol from checkout
    @lgannoaa
    lgannoaa committed Sep 23, 2020
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Commits on Sep 24, 2020

  1. modifications to python scripts 

       remove aeroic task from setup_workflow_fcstonly.py
   delete setup_workflow_fcstonly_noaeroic.py
   add setup_workflow_fcstonly_aeroic.py
    @jkhender
    jkhender committed Sep 24, 2020
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Commits on Sep 30, 2020

  1. - updated to use 28Sep develop ufs-weather-model, d021e7b 

       f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03)
   9e1ba7c FV3 (heads/develop)
   9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop)
   96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8)
   ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics (ufs-v1.0.0-70-gffdd19b)

 - changed compilation options in build_fv3.sh
 - removed fv3gfs.fd_jkh directory since changes are already in develop branch
 - updated getic script to retrieve files after 00Z 26Feb20 from mass store with prefix name of 'com'
    @jkhender
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Commits on Oct 13, 2020

  1. Merge remote-tracking branch 'origin/feature/gfsv16b' into feature/ccpp

    @lgannoaa
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Commits on Oct 22, 2020

  1. Cycled warm start run using develop ufs-weather-model branch and feat… 

    …ure/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563).

CPP_SUITE="FV3_GFS_v16beta"
build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta
wave is turned off for this test because it's for atmospheric physics and comparison.
    @lgannoaa
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  2. Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp

    @lgannoaa
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Commits on Nov 12, 2020

  1. As of 11/12/2020, this package is tested with a C768 cycled (6 cycle)… 

    … run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off.

Ready to merge back to the development.
The expdir and log files are available on HPSS:
/NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar
/NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar
File parm/config/config.resources has been modified to fix EUPD job issue in job card resource.
File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark.
Removed a developer directory that is not required for FV3_GFS_v16beta confiruration.
    @lgannoaa
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  2. Merge remote-tracking branch 'upstream/develop' into feature/ccpp

    @lgannoaa
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  3. Changes to be committed: 

           modified:   jobs/rocoto/fcst.sh
       deleted:    modulefiles/module_base.wcoss_dell_p3_fcst
       deleted:    parm/config/config.aeroic
       modified:   parm/config/config.base.emc.dyn
       modified:   parm/config/config.resources
       modified:   sorc/build_fv3.sh
       modified:   sorc/checkout.sh
       modified:   sorc/link_fv3gfs.sh
       deleted:    ush/load_fv3gfs_modules_fcst.sh
       deleted:    ush/rocoto/setup_workflow_fcstonly_aeroic.py
    @lgannoaa
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  4. deleted: jobs/rocoto/aeroic.sh

    @lgannoaa
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  5. Remove GSD suite file and aero IC extract util

    @lgannoaa
    lgannoaa committed Nov 12, 2020
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  6. sync config.base.emc.dyn and config.resources with development

    @lgannoaa
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Commits on Nov 13, 2020

  1. modified: parm/config/config.base.emc.dyn 

      parm/config/config.base.nco.static
  scripts/exglobal_forecast.sh
  sorc/build_all.sh
  sorc/build_fv3.sh
  sorc/checkout.sh
 to add the option to check out ufs_weather_model and run with CCPP phsyics
    @yangfanglin
    yangfanglin committed Nov 13, 2020
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  2. Merge with v16ccpp 

           modified:   parm/config/config.base.emc.dyn
       modified:   parm/config/config.resources
       modified:   scripts/exglobal_forecast.sh
       modified:   sorc/build_fv3.sh
       modified:   sorc/checkout.sh
    @lgannoaa
    lgannoaa committed Nov 13, 2020
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  3. update eupd resource

    @lgannoaa
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  4. Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp

    @lgannoaa
    lgannoaa committed Nov 13, 2020
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  5. Remove development configuration from config.nsst

    @lgannoaa
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  6. modified: ../scripts/exglobal_forecast.sh 

    modified:   build_all.sh  build_fv3.sh to automatically detect model version, CCPP vs IPD
    @yangfanglin
    yangfanglin committed Nov 13, 2020
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  7. Modified build_all.sh checkout.sh partial_build.sh to allow switch tu… 

    …rn on/off ccpp option

Turn on CCPP usage:
  checkout.sh -c
  build_all.sh -c
Turn off CCPP usage:
  checkout.sh
  build_all.sh
    @lgannoaa
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  8. Clean up development code from build_all

    @lgannoaa
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Commits on Nov 15, 2020

  1. modified: build_fv3.sh

    @yangfanglin
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  2. modified: exglobal_forecast.sh to add 

      min_lakeice  = ${min_lakeice:-"0.15"}
  min_seaice   = ${min_seaice:-"0.15"}
    @yangfanglin
    yangfanglin committed Nov 15, 2020
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  3. bug fix exglobal_forecast.sh

    @yangfanglin
    yangfanglin committed Nov 15, 2020
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Commits on Nov 16, 2020

  1. modified: ../parm/config/config.fcst and exglobal_forecast.sh 

    1. use iovr for model after NCAR/ccpp-physics#514
   and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP
2. remove the if block and use atmos_model_nml to turn on/off the CCPP option
    @yangfanglin
    yangfanglin committed Nov 16, 2020
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  2. modified checkout.sh to check out a hash instead of head of the devel… 

    …op branch
    @yangfanglin
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  3. modified: ../scripts/exglobal_forecast.sh

    @yangfanglin
    yangfanglin committed Nov 16, 2020
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  4. Modify exglobal_forecast.sh to create namelist in runable sequence.

    @lgannoaa
    lgannoaa committed Nov 16, 2020
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  5. Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp 

    Pull in the iovr=3 in config.fcst
    @lgannoaa
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  6. As requested, using 2e25df5 for ufs-weather-model.

    @lgannoaa
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  7. scripts/exglobal_forecast.sh Merge with v16ccpp

    @lgannoaa
    lgannoaa committed Nov 16, 2020
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  8. Modify build_all.sh 

    while getopts "oc" option
to
while getopts "c" option
    @lgannoaa
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  9. Fix missing COMROOT setting on Orion

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Nov 16, 2020
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  10. Merge pull request #1 from KateFriedman-NOAA/ccpp 

    Fix missing COMROOT setting for Orion
    @lgannoaa
    lgannoaa authored Nov 16, 2020
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Commits on Nov 17, 2020

  1. Adjust efcs walltime and eupd thread value on Orion

    @KateFriedman-NOAA
    KateFriedman-NOAA committed Nov 17, 2020
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  2. Merge pull request #2 from KateFriedman-NOAA/ccpp 

    Adjust efcs walltime and eupd thread value on Orion
    @lgannoaa
    lgannoaa authored Nov 17, 2020
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