GFSv15.3.0 production updates #63

KateFriedman-NOAA · 2020-04-22T18:04:59Z

Created release branch for hand-off to NCO: release/gfs.v15.30.0

Branch contains the following changes:

ProdGSI tag update (from issue Changes for GFSv15.3 #37)
bug fix to syndat_qctropcy.fd/qctropcy.f
change to link_fv3gfs.sh to point to updated fix file set which contains updated syndat_stmnames file
change to checkout.sh to update ProdGSI, EMC_post_gtg, and EMC_gfs_wafs tags to latest ops versions

The syndat_stmnames fix file under fix_am subset is being updated to fix a storm name.

It was decided to establish a frozen copy of FIX_DIR on supported platforms for v15 fix files ("fix_nco_gfsv15"). Copy established by Fanglin Yang and copied to supported platforms by Kate Friedman.

Will update link script to point to frozen "fix_nco_gfsv15" copy on supported platforms. Will freeze and version FIX_DIR like this going forward.

A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also #63

KateFriedman-NOAA · 2020-04-28T19:04:15Z

Created release/gfs.v15.2.13 branch off operations branch for this work.

…nk_fv3gfs.sh to point to fix_nco_gfsv15 set that includes fix to storm names in syndat_stmnames

… versions

KateFriedman-NOAA · 2020-04-28T20:19:41Z

Created release tag for hand-off to NCO: RT-GFS-v15.2.13

Tag contains the following changes:

bug fix to syndat_qctropcy.fd/qctropcy.f
change to link_fv3gfs.sh to point to updated fix file set which contains updated syndat_stmnames file
change to checkout.sh to update ProdGSI and EMC_post_gtg tags to latest ops versions

KateFriedman-NOAA · 2020-05-01T13:22:53Z

CDF drafted and sent to NCO.

RussTreadon-NOAA · 2020-05-02T12:26:57Z

NCO requested and EMC management agreed that GFS v15.2.13 and GFS v15.3.0 be merged into a single implementation package. As such GFS v15.3 development is now being tracked in issued #63. Commit c90ea4b updated sorc/checkout.sh in workflow branch release/gfs.v15.2.13 to point at the GFS v15.3.0 DA tag.

GFS v15.3 issue #37 may be closed and workflow branch feature/gfs.v15.3 removed as both are now obsolete.

KateFriedman-NOAA · 2020-05-04T13:22:12Z

Created release/gfs.v15.3.0 off release/gfs.v15.2.13 for hand-off.

KateFriedman-NOAA · 2020-05-04T16:48:49Z

Tested implementation instructions for NCO on Venus (used VLab workarounds) and modified link_fv3gfs.sh to use rsync instead of cp to make the FIX_DIR pickup faster/safer.

Updated implementation instructions with workaround details.

…repo

KateFriedman-NOAA · 2020-05-06T13:54:43Z

Implementation instructions prepared and tested with final package. Handing off to NCO today.

KateFriedman-NOAA · 2020-05-26T14:16:13Z

From the May 22nd RFC memo:

RFC 6893 – gfs v15.3.0 – On WCOSS, upgrade the GFS to v15.3.0. This new version implements the assimilation of COSMIC-2 GNSS-RO (Global Navigation Satellite System - Radio Occultation) data; fixes a bug in ‘sorc/syndat_qctropcy.fd/qctropcy.f’ which can cause bad tcvital records in the quality control step; updates ‘fix/fix_am/syndat_stmnames’, which is a fix file with updated tropical storm names; and enables alerting of GFS master files. To be implemented on May 26 at 1300Z.

…26th at 13Z

KateFriedman-NOAA · 2020-05-27T14:36:35Z

Did comparison between release/gfs.v15.3.0 branch and the nwprod/gfs.v15.3.0 installation post-implementation on May 26th. Found final post-hand-off/pre-implementation changes and committed them to release/gfs.v15.3.0 branch at 737cfa8.

Will initiate PR to merge release/gfs.v15.3.0 into operations branch. Will run test on WCOSS to compare against ops before completing PR.

KateFriedman-NOAA · 2020-06-02T14:12:21Z

Reproduce test against ops successful, although I had to make local changes to handle the GDA structure change and point to updated obsproc versions. Performing PR to merge release/gfs.v15.3.0 branch into operations branch and then tag NCO-v15.3.0.

KateFriedman-NOAA · 2020-06-02T14:19:38Z

Submitted PR #79 and deleted release/gfs.v15.3.0 via PR. Created tag NCO-v15.3.0.

Corrected setting of nwat for Thompson MP in config.fcst Squashed commit of the following: commit 28b1faf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a930 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c36 Merge: 99277ae 1e56edd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56edd Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ec Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885 Merge: 968b986 bf5a5c4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c4 Merge: b27a01d 968b986 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b986 Merge: 9b36cfd dc512dd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd Merge: a7b25a3 987c32a Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32a Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee67 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba89548 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e25 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29 Merge: 49abb90 e87b5a1 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb90 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a1 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d7131 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd821 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a133 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2 commit 4291349 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue May 12 03:05:17 2020 +0000 modified: checkout.sh to check out gldas_gfsv16_release.v1.2.0. commit 0c0614c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 8 18:29:07 2020 +0000 Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources commit a601acd Author: emc.glopara <emc.glopara@noaa.gov> Date: Fri May 8 04:17:27 2020 +0000 updated config.vrfy to point to the fit2obs version that supports reading netcdf history files export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun" export PREPQFITSH="$fitdir/subfits_hera_slurm" commit ad86a55 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed May 6 15:28:49 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1 commit 20572b5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 1 19:08:23 2020 +0000 Issue #1: update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates commit 20baab7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 29 18:49:05 2020 +0000 modified: checkout.sh to check out model tag GFS.v16.0.3 In Sfc_diff.f, a bug was introduced when the surface layer scheme was updated last time to reduce 2-m temperature cold biases. The bug only has impact over sea-ice points, where momentum and thermal roughness are nevertheless very small. commit af63464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 28 18:18:44 2020 +0000 modified: qctropcy.f by Qingfu Liu A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also #63

A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also NOAA-EMC/global-workflow#63

Corrected setting of nwat for Thompson MP in config.fcst Squashed commit of the following: commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52e299482687d84ef6686e6a65f64fe57f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e54988f2fb2f4cda0510af02a090dfdda2e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c368a2d55018e4a1567717efd7ffa09f14d9 Merge: 99277ae3 1e56eddb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56eddb055b1414385e276ac73255d3ede9e9e9 Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae34ef50454fa15e7e28b564c2e34e3406c Merge: 14dd3c94 4f8d5a5f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5f28c7120905fe36e9254f0199da986188 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c94938b0e69601e25a42104b2fc23944ebd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002425a03905bfc6ef63d3f43a6813814497 Merge: df89cc80 dd599eaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48 Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc800d3c479c132a5e679a2562af91b32f62 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368 Merge: 1dd83b81 965ff420 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff4203f132c6b032398a7a56494329714247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d714119960feed1f0807708cdf85677ab81d73 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b818e9f2babbd11b762951721cf2a4c415e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4d009047251c535eea6fdc5958e58e68f7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0715a29e52e4d7133a8259c492229a5c22 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5c680d54297101fae573579be24411a94a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed4119b067905f5a4bf47656557f2211883 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d8782697fa698c00daa242a656246cf5f5d9b537 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621727701e9526feccc7ce8ebd43be31860f Merge: 22b735d3 295cd05f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05f306e4d70d09880a41fd60fadce74bab3 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d310413989568dca4b30d19eadcd4c3fdb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60197c38acb724cfdf4a30a20417a6618b4 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b2d43acd13a08bf1d5ab2251db90a11d32 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa93d537da5b165297e0dc34ba88856d4c7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885b082e8a837aef095deb6a3343fca26cb3 Merge: 968b9860 bf5a5c44 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd Merge: b27a01db 968b9860 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b98609fe2016518f3adcc6b178bdca0b73bcf Merge: 9b36cfde dc512dd6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfde2032e9296cc7567704e1274560b2897e Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd68df088361c340ac01ec3c8130707ffd1 Merge: a7b25a3b 987c32af Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01db1516f9aa229e75957885ffa2125d31d6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba895481be53906878f58c2998a398bc59870ea2 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac802b289cb9b6867c003ff27ef1711327a Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29b62cf747662909ff50a6bf8f327127a09 Merge: 49abb906 e87b5a18 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb9068effc5aeeba8f861f44207b67ff442c9 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d71310132813c1066a9b0f881ef686602a23c4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8dff96e45e690c8e1a2932c8d846afb1655 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f103bab78f9d2426599f976dc318eff4e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236b233b6bcf2dc008006a82ccd459d7e3f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84041f2a2f221e85d6543657f229408328c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a77e59660f4b58279375a83d179c891b385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d3552fd971cde09148bc392ad93bf104e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a1335ef3feb0242245b5661f22650a0a2e576 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2 commit 42913497cbb82435318797ee2148ec35311e8ea6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue May 12 03:05:17 2020 +0000 modified: checkout.sh to check out gldas_gfsv16_release.v1.2.0. commit 0c0614cd03e6ee178275b85be7636f842f1eb77e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 8 18:29:07 2020 +0000 Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources commit a601acda14b2c8c58d2d3ae484fa57812bf8801a Author: emc.glopara <emc.glopara@noaa.gov> Date: Fri May 8 04:17:27 2020 +0000 updated config.vrfy to point to the fit2obs version that supports reading netcdf history files export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun" export PREPQFITSH="$fitdir/subfits_hera_slurm" commit ad86a552ac5893e2c57a36772b94d3e05ccf4d33 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed May 6 15:28:49 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1 commit 20572b53aab8579b20aaf4e365c59f32fd386b5f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 1 19:08:23 2020 +0000 Issue #1: update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates commit 20baab7ab7f7c151330cea30027b90ff30bfc83b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 29 18:49:05 2020 +0000 modified: checkout.sh to check out model tag GFS.v16.0.3 In Sfc_diff.f, a bug was introduced when the surface layer scheme was updated last time to reduce 2-m temperature cold biases. The bug only has impact over sea-ice points, where momentum and thermal roughness are nevertheless very small. commit af6346497abe1d05d408c8c2b819427120a22961 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 28 18:18:44 2020 +0000 modified: qctropcy.f by Qingfu Liu A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also NOAA-EMC/global-workflow#63

A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also NOAA-EMC/global-workflow#63

Corrected setting of nwat for Thompson MP in config.fcst Squashed commit of the following: commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52e299482687d84ef6686e6a65f64fe57f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e54988f2fb2f4cda0510af02a090dfdda2e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c368a2d55018e4a1567717efd7ffa09f14d9 Merge: 99277ae3 1e56eddb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56eddb055b1414385e276ac73255d3ede9e9e9 Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae34ef50454fa15e7e28b564c2e34e3406c Merge: 14dd3c94 4f8d5a5f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5f28c7120905fe36e9254f0199da986188 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c94938b0e69601e25a42104b2fc23944ebd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002425a03905bfc6ef63d3f43a6813814497 Merge: df89cc80 dd599eaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48 Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc800d3c479c132a5e679a2562af91b32f62 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368 Merge: 1dd83b81 965ff420 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff4203f132c6b032398a7a56494329714247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d714119960feed1f0807708cdf85677ab81d73 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b818e9f2babbd11b762951721cf2a4c415e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4d009047251c535eea6fdc5958e58e68f7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0715a29e52e4d7133a8259c492229a5c22 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5c680d54297101fae573579be24411a94a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed4119b067905f5a4bf47656557f2211883 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d8782697fa698c00daa242a656246cf5f5d9b537 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621727701e9526feccc7ce8ebd43be31860f Merge: 22b735d3 295cd05f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05f306e4d70d09880a41fd60fadce74bab3 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d310413989568dca4b30d19eadcd4c3fdb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60197c38acb724cfdf4a30a20417a6618b4 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b2d43acd13a08bf1d5ab2251db90a11d32 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa93d537da5b165297e0dc34ba88856d4c7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885b082e8a837aef095deb6a3343fca26cb3 Merge: 968b9860 bf5a5c44 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd Merge: b27a01db 968b9860 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b98609fe2016518f3adcc6b178bdca0b73bcf Merge: 9b36cfde dc512dd6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfde2032e9296cc7567704e1274560b2897e Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd68df088361c340ac01ec3c8130707ffd1 Merge: a7b25a3b 987c32af Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01db1516f9aa229e75957885ffa2125d31d6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba895481be53906878f58c2998a398bc59870ea2 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac802b289cb9b6867c003ff27ef1711327a Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29b62cf747662909ff50a6bf8f327127a09 Merge: 49abb906 e87b5a18 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb9068effc5aeeba8f861f44207b67ff442c9 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d71310132813c1066a9b0f881ef686602a23c4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8dff96e45e690c8e1a2932c8d846afb1655 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f103bab78f9d2426599f976dc318eff4e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236b233b6bcf2dc008006a82ccd459d7e3f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84041f2a2f221e85d6543657f229408328c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a77e59660f4b58279375a83d179c891b385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d3552fd971cde09148bc392ad93bf104e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a1335ef3feb0242245b5661f22650a0a2e576 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2 commit 42913497cbb82435318797ee2148ec35311e8ea6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue May 12 03:05:17 2020 +0000 modified: checkout.sh to check out gldas_gfsv16_release.v1.2.0. commit 0c0614cd03e6ee178275b85be7636f842f1eb77e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 8 18:29:07 2020 +0000 Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources commit a601acda14b2c8c58d2d3ae484fa57812bf8801a Author: emc.glopara <emc.glopara@noaa.gov> Date: Fri May 8 04:17:27 2020 +0000 updated config.vrfy to point to the fit2obs version that supports reading netcdf history files export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun" export PREPQFITSH="$fitdir/subfits_hera_slurm" commit ad86a552ac5893e2c57a36772b94d3e05ccf4d33 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed May 6 15:28:49 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1 commit 20572b53aab8579b20aaf4e365c59f32fd386b5f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 1 19:08:23 2020 +0000 Issue #1: update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates commit 20baab7ab7f7c151330cea30027b90ff30bfc83b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 29 18:49:05 2020 +0000 modified: checkout.sh to check out model tag GFS.v16.0.3 In Sfc_diff.f, a bug was introduced when the surface layer scheme was updated last time to reduce 2-m temperature cold biases. The bug only has impact over sea-ice points, where momentum and thermal roughness are nevertheless very small. commit af6346497abe1d05d408c8c2b819427120a22961 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 28 18:18:44 2020 +0000 modified: qctropcy.f by Qingfu Liu A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also NOAA-EMC/global-workflow#63

@SMoorthi-emc

* Updates to stochastic_physics_wrapper (NOAA-EMC#280) Fix to stochastic_physics_wrapper to allow for random patterns to update at a longer time-step than model Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Update for Jet, bug fixes in running with frac_grid=T and GFDL MP, and in restarting with frac_grid=T (NOAA-EMC#304) Update the modulefile for jet.intel to enable UPP v10.0.0. The hpc-stack v1.0.0 pre-release is used for this. Small changes are made to tests.rt.sh for jet.intel and gaea.intel (consistency with other platforms). The submodule pointer update for fv3atm addresses bugs in the ufs-weather-model with frac_grid=T and GFDL microphysics, and with restarting the model when frac_grid=T (from @shansun6 and @SMoorthi-emc). * Feature/update mom6 and retain b4b results for 025x025 resolution (NOAA-EMC#290) * point MOM6 to new branch which corresponding to GFDL 20201022 commit * modify fms_files.cmake and mom6_files.cmake to reflect changes in MOM6 code as this version of MOM6 contains some file deletion, new files being added and renaming of files * manually set MOM6 parameters in order to retain origonal results for 0.25x0.25 resolution * update MOM6 to include Bugfix for mom6solo to be built * modify compile.sh to allow mom6solo compiling * modify MOM_input_template for all resolutions based on GFDL MOM6-example main branch update on 20201022 * change executable permissions for CMakeLists.txt * chmod 644 to 6 files Dom pointed out * chmod for CMakeLists.txt and tests/compile.sh * change baseline directpory to 20201202 in rt.sh * Update CICE, Move regression test input outside baseline directory (NOAA-EMC#270) *Updates CICE to most recent develop branch of NOAA-EMC * Sets n_aero (number of aerosols) in ice_in_template to 0. * removes trailing whitespace from ice_in * moves regression test input outside baseline directory (ufs-weather PR NOAA-EMC#312) Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com> Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com> * Updates to build for JEDI linking/control, add wcoss2 (#295) * Build on wcoss2 (acorn) * Use -march=core-avx2 instead of -xCORE-AVX2 on wcoss2 * Updates to build for JEDI linking/control * Removed unnecessary include files and INLINE POST setting * Updated to address PR suggestions. * Add rt_acorn.conf. Change /lfs/h2 to /lfs/h1. * Update .gitmodules and submodule pointer for fv3atm for code review and testing * regression test results * Updated .gitmodules and removed extraneous file * Fixed .gitmodules and updated pointer for FV3 * Updated pointer to NEMS repo Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov> Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Final-final GFS v16 updates / restart reproducibility bugfixes (NOAA-EMC#325) * Update .gitmodules and submodule pointer for fv3atm for code review and testing * Add GFS v16 beta restart test, update stochastics test * Update regression test baseline date tag to 20201214; skip-ci * tests/rt.conf: bugfix, add missing 'fv3' to new stochy tests; skip-ci * Regression test logs for gaea.intel, hera.gnu, hera.intel, jet.intel, orion.intel; skip-ci * Run GFS v16beta tests also on wcoss; regression test logs for wcoss; skip-ci * Regression test logs for cheyenne.intel and cheyenne.gnu * Revert change to .gitmodules and update submodule pointer for fv3atm * Add optional bulk flux calculation in ufs-datm (NOAA-EMC#266) * Update NEMS DATM and CMEPS to allow the optional bulk flux formulation; add two tests using the option * Update top level CMakeList.txt to have compile flags for MOM6 and CICE6 identical for ufs-cpld and ufs-datm * Add optional configuration variable to nems.configure to specify the directory where CMEPS will write restarts * Adds cheyenne tasking variables to default_vars and sets WW3_COMP to cheyenne for platform cheyenne.intel *NOTE: Baselines develop-20201215 exist on all platforms, regression tests were run against exactly that baseline on all systems except cheyenne.intel. On cheyenne.intel the tests were run against 20201214, and this baseline is identical to 20201215 (as per "diff -r develop-20201214 develop-20201215"). Co-authors: @DusanJovic-NOAA @aerorahul @JessicaMeixner-NOAA skip-ci * Add 2 new tests for DATM-MOM6-CICE6 application (NOAA-EMC#332) * Add the following 2 tests: datm_restart_cfsr, datm_debug_cfsr * Add wcoss_dell_p3.log. * Add Hera log, Orion log, wcoss_dell_p3 log. * RRTMGP and Thompson MP coupling (NOAA-EMC#323) * Feature branch with RRTMGP and Thompson MP * Updated FV3/ccpp-physics. Added namelist and configuration for RRTMGP RTs using GSD physics. * Updated FV3 * Update physics in FV3 * Updated baselines in rt.sh * Updated RT logs. Updated FV3 physics submodule pointer. * Updated FV3 hash and .gitmodules * Regression test log for PR NOAA-EMC#323 for jet.intel (NOAA-EMC#336) * Update modules with hpc-stack v1.1.0 (NOAA-EMC#319) * Update modules with hpc-stack v1.1.0 * Minor bug fixes to CCPP UGWP Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Replace old regional SDF with FV3_GFS_v15_thompson_mynn (NOAA-EMC#333) * Replace old FV3_GFS_2017_gfdlmp_regional SDF for regional tests with FV3_GFS_v15_thompson_mynn. * Final path to IC's and new results. Also, input.nml updated. * Update RegressionTests_wcoss_dell_p3.log * Update RegressionTests_wcoss_cray.log * Update RegressionTests_hera.intel.log * Update RegressionTests_jet.intel.log * Update RegressionTests_orion.intel.log * Update RegressionTests_cheyenne* logs. * Update RegressionTests_hera.gnu.log * Feature/ww3update (NOAA-EMC#334) This updates the WW3 submodule pointer to point to the top of the WW3 develop branch. The path to WW3 inputs is changed to input-data-20201201/WW3_input_data_20201207/ * Remove IPD (step 1) (NOAA-EMC#331) Make CCPP=Y the default in tests/compile.sh. Remove CCPP=Y from tests/rt*.conf and adjust formatting. Update submodule pointer for MOM6 to include PR NOAA-EMC#341 ("Update MOM6 to GFDL's 20201218 commit") Add modulefiles/wcoss_cray/fv3_debug (identical to modulefiles/wcoss_cray/fv3) Fix broken utest (see NOAA-EMC#348) * Update the format of rt.conf (NOAA-EMC#349) Update the format of MACHINES column in rt.conf (and other .conf files). This column can be either empty, which means a test will run on all supported machines, or start with - or + sign to exclude or include specified machines explicitly. * Add checkpoint restarts for ufs-cpld (NOAA-EMC#342) * Adds 3 checkpoint restart tests for the ufs-cpld model * Drops the existing c92mx025 restart test * Adds cheyenne.intel as tested configuration for ufs-cpld and ufs-datm * Fixes instances of srf_data* in various fv3_conf files * add frac grid input, update and add additional cpld tests (NOAA-EMC#354) * Updates FV3_input_frac to add both benchmark dates and L127 files * Adds additional tests and restart tests for coupled model * Sets all cpld tests to use frac grid input by default * Removes all instances of USE_LA_LI2016=True except for benchmark+wave configurations * Remove unnecessary SIMD instruction sets for Jet, first round of cleanup in rt.conf, initialize cld_amt to zero for regional runs (dycore) (NOAA-EMC#353) * Reduce SIMDMULTIARCH sets from four to two in cmake/Intel.cmake * First cleanup of regression test config tests/rt.conf * tests/rt.sh: reduce number of build jobs on jet.intel from 10 to 5 * Remove flags -f and -s from rt.sh, remove SET logic, remove corresponding column in all rt*conf files * Remove tests/rt_acorn.conf and run GFS v15p2 and GFS v16beta DEBUG tests on all platforms * Implementation of CCPP timestep_init and timestep_final phases (NOAA-EMC#337) * Update .gitmodules and submodule pointer for fv3atm for code review and testing * Update submodule pointer for fv3atm; skip-ci * Don't try to compile all suites in DEBUG mode on cheyenne.intel, weird bug on compute nodes; skip-ci * Don't try to compile all suites in DEBUG mode on wcoss_cray; skip-ci * Regression test logs for cheyenne.gnu, cheyenne.intel, gaea.intel, hera.gnu, hera.intel, jet.intel, orion.intel; skip-ci * Don't try to compile all suites in DEBUG mode on wcoss_dell_p3; skip-ci * Regression test logs for wcoss_cray and wcoss_dell_p3 * Revert change to .gitmodules and update submodule pointer for fv3atm * Update CMEPS (NOAA-EMC#345) * Update CMEPS for recent changes, including addition of new run "post" run phases to eliminate redundant mapping, multiple ice sheet capability and ocn->land ice dynamic mapping * Add a new test fv3_gfs_v16_RRTMGP_c192L127 Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> * Remove IPD steps 3 and 5 (NOAA-EMC#357) Reduce SIMDMULTIARCH sets from four to two in cmake/Intel.cmake * First cleanup of regression test config tests/rt.conf * tests/rt.sh: reduce number of build jobs on jet.intel from 10 to 5; skip-ci * Remove flags -f and -s from rt.sh, remove SET logic, remove corresponding column in all rt*conf files * Update usage in rt.sh, add modulefiles/jet.intel/fv3_debug; skip-ci * CCPP is default in cmake build * Add debug modulefiles for linux.gnu and macosx.gnu * Update submodule pointer for fv3atm * Change logic in CMakeLists.txt and tests/compile.sh so that 32BIT=ON automatically sets DYN32=ON; skip-ci * Move logic to set DYN32 - depending on 32BIT setting - to fv3atm * Remove -DCCPP=ON from tests/compile.sh; update submodule pointer for fv3atm; skip-ci * point fv3 to EMC develop branch (NOAA-EMC#377) * update cpl gfsv16 tests, rrtmgp fix and bug fixes in cmeps (NOAA-EMC#378) * update CMEPS, fix character length error for gnu compile * add Dusan's fix for rt_utils.sh * update cpl gfsv16 tests, replace seaice_newland.grb with global_slmask.t1534.3072.1536.grb, recover input.mom6.nml.IN, update input directory, update global thread and decomp tests, update fdiag for global control * point to Dustins rrtmgp fix branch * update input directory Co-authored-by: denise.worthen <Denise.Worthen@noaa.gov> Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> * Update develop from NOAA-GSL: RUC ice, MYNN sfclay, stochastic land perturbations (NOAA-EMC#386) * Update .gitmodules and submodule pointer for fv3atm for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-EMC#47) (NOAA-EMC#49)Implementation of RUC LSM ice model in CCPP * Squash-merge climbfuji:rucice_gfsv16dzmin into gsl/develop * Add kice=9 to tests/tests/fv3_ccpp_rap and tests/tests/fv3_ccpp_hrrr * Change NEW_BASELINE directory for gsl/develop to avoid conflicts with development work on the authoritative branches * Add KICE=9 to tests/tests/fv3_ccpp_gsd_unified_ugwp and tests/tests/fv3_ccpp_gsd_drag_suite_unified_ugwp * Revert change to .gitmodules and update submodule pointer for fv3atm * Update gsl/develop from develop 2020/12/08 (NOAA-EMC#50) * Updates to stochastic_physics_wrapper (NOAA-EMC#280) Fix to stochastic_physics_wrapper to allow for random patterns to update at a longer time-step than model * Update for Jet, bug fixes in running with frac_grid=T and GFDL MP, and in restarting with frac_grid=T (NOAA-EMC#304) Update the modulefile for jet.intel to enable UPP v10.0.0. The hpc-stack v1.0.0 pre-release is used for this. Small changes are made to tests.rt.sh for jet.intel and gaea.intel (consistency with other platforms). The submodule pointer update for fv3atm addresses bugs in the ufs-weather-model with frac_grid=T and GFDL microphysics, and with restarting the model when frac_grid=T (from @shansun6 and @SMoorthi-emc). * Land stochastic perturbations (NOAA-EMC#57) * dycore options to add zero-gradient BC to reconstruct interface u/v and change dz_min as input (NOAA-EMC#369) * Update fv3atm * update ccpp control test forecast length to 24h * remove rename command * Add CI related changes * Update RT logs * Update RT log files * Add the gaea RT log file * Update the point of fv3atm * Update fv3atm Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> Co-authored-by: MinsukJi-NOAA <minsuk.ji@noaa.gov> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> * MOM6 bugfixes, GFDL update, update CDMBGWD settings; fix for restart reproducibility (without waves) when USE_LA_LI2016=True, sign error on fprec passed to ocean, GFDL update, resolution dependent cdmbgwd settings (NOAA-EMC#379) * implements two MOM6 bugfixes in the NUOPC MOM6 cap to allow restart reproducibility when USE_LA_LI2016=True and to change the sign of the latent heat flux associated with frozen precipitation (fprec) exported to MOM6 * updates MOM6 to include the GFDL 20210120 main branch which contains EMC's wave coupling code, alone with some minor code standardization and documentation * updates the cdmbgwd namelist settings for FV3 standalone tests at C96 and implements resolution dependent values for ufs-cpld tests Co-authored-by: Ali <ali.abdolali@noaa.gov> * Remove legacy gnumake build from fv3atm and NEMS, remove legacy Python 2.7 support, rename v16beta to v16 and RT updates (NOAA-EMC#384) * Update .gitmodules and submodule pointers for fv3atm and NEMS * Remove Python 2.7 support from top-level CMakeLists.txt * Reduce forecast length of test fv3_ccpp_gfs_v16_RRTMGP_c192L127 from 24h to 12h * Rename v16beta to v16 everywhere except the public release documentation * Bugfixes and missing changes * Remove 'export CCPP_LIB_DIR=ccpp/lib' from all regression tests * Update regression test baseline date tag to 20210128; skip-ci * Update ecflow-python environment on cheyenne and jet; skip-ci * Update CMEPS for HAFS integration; add datm and coupled-model tests on Gaea (NOAA-EMC#401) * Add HAFS support in NOAA-EMC/CMEPS * Add coupled and datm tests for Gaea.intel Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> Co-authored-by: Bin Li <Bin.Li@gaea13.ncrc.gov> * Move LSM vegetation lookup tables into CCPP, clean up RUC snow cover on ice initialization (remove IPD step 2) (NOAA-EMC#407) * Regression test logs for all tier=1 platforms * updates FMS to 2020.04.01 (NOAA-EMC#392) * updates FMS to 2020.04.01 * fixes fms_files.cmake * removes extra horiz_interp * Workaround for FMS 2020.04.01 for Cheyenne with GNU 9.1.0, incl. regression test log Co-authored-by: Mikyung Lee <mlee@Orion-login-1.HPC.MsState.Edu> Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * add optional mesh in MOM6; add dz_min and min_seaice as configurable variables for coupled model (NOAA-EMC#399) *Implements an optional setting in the cpld and datm nems.configure files to specify whether the MOM6 cap should use a mesh or a grid *Adds configurable settings for min_seaice to gfs_physics_nml and dz_min to fv_core_nml. * UGWP v0 v1 combined (NOAA-EMC#396) - combines the changes in PRs NOAA-EMC#360 and NOAA-EMC#382 - adds three regression tests `fv3_ccpp_gfsv16_ugwpv1 `, `fv3_ccpp_gfsv16_ugwpv1_warmstart` and `fv3_ccpp_gfsv16_ugwpv1_debug` - contains updates and bugfixes for `nc_compare.py` and the CI tests from @MinsukJi-NOAA - update Python3 environment on jet.intel, gaea.intel, cheyenne.{intel,gnu} - turn off (again) test `fv3_ccpp_decomp` on jet.intel, this test didn't work in the past, but recently it "passed", because the error checking with `nc_compare.py` failed silently and we didn't notice it Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: MinsukJi-NOAA <minsuk.ji@noaa.gov> * Update regression tests from GFSv15+Thompson to GFSv16+Thompson, include "Add one regional regression test in DEBUG mode. (NOAA-EMC#419)" (NOAA-EMC#421) * Add one regional regression test in DEBUG mode. * Update .gitmodules and submodule pointer for fv3atm for code review and testing * Update regression tests from GFSv15+Thompson to GFSv16+Thompson * Combine several COMPILE lines in tests/rt.conf and tests/rt_gnu.conf * Regression test log for cheyenne.{gnu,intel},gaea.intel, hera.gnu, jet.intel,hera.intel,orion.intel;wcoss_cray and wcoss_dell_p3; Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: jiandewang <jiande.wang@noaa.gov> Co-authored-by: Denise Worthen <denise.worthen@noaa.gov> Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com> Co-authored-by: Mark Potts <33099090+mark-a-potts@users.noreply.github.com> Co-authored-by: BinLi-NOAA <bin.li@noaa.gov> Co-authored-by: dustinswales <dustin.swales@noaa.gov> Co-authored-by: Kyle Gerheiser <3209794+kgerheiser@users.noreply.github.com> Co-authored-by: RatkoVasic-NOAA <37597874+RatkoVasic-NOAA@users.noreply.github.com> Co-authored-by: Ali.Abdolali <37336972+aliabdolali@users.noreply.github.com> Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: Ali <ali.abdolali@noaa.gov> Co-authored-by: Bin Li <Bin.Li@gaea13.ncrc.gov> Co-authored-by: MiKyung Lee <58964324+mlee03@users.noreply.github.com> Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: MinsukJi-NOAA <minsuk.ji@noaa.gov>

Update hera.yaml

…erturbations (NOAA-EMC#239) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-GSL#54 and NOAA-GSL#56) (NOAA-GSL#60) Implementation of RUC LSM ice model in CCPP * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update gsl/develop from develop 2020/12/08 (NOAA-GSL#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-GSL#63) * Land stochastic perturbations (wrapper PR for NOAA-GSL#65) (NOAA-GSL#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated * Update .gitmodules and submodule pointer for GFDL_atmos_cubed_sphere for code review and testing * Revert change to .gitmodules for ccpp-physics, update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for GFDL_atmos_cubed_sphere Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov>

@SMoorthi-emc

* Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-GSL#54 and NOAA-GSL#56) (NOAA-GSL#60) Implementation of RUC LSM ice model in CCPP * Squash-merge climbfuji:rucice_gfsv16dzmin into gsl/develop * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Update gsl/develop from develop 2020/12/08 (NOAA-GSL#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-GSL#63) * Land stochastic perturbations (wrapper PR for NOAA-GSL#65) (NOAA-GSL#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Update gsl/develop from develop 2021/02/22 (NOAA-EMC#73) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * jedi-ufs with ccpp-physics submodule update (contains NOAA-EMC#201) (NOAA-EMC#211) * updated CMakeLists.txt * Changes for JEDI linking/control * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> * Final-final GFS v16 updates / restart reproducibility bugfixes (NOAA-EMC#212) * updates the submodule pointer for ccpp-physics for the final-final (!) GFS v16 physics updates * fixes a bug in io/FV3GFS_io.F90 to obtain restart reproducibility for uncoupled and coupled runs - contributed by @SMoorthi-emc Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> * RRTMGP coupling to Thompson MP in ccpp-physics (NOAA-EMC#208) * Updated physics. Added infrastructure to FV3 to handle new GP capabilities. Thompson MP, LW scattering, Use of LW-jacobian to update surface tendencies. * Some small changes to work with physics improvements to RRTMGP. * RRTMGP working with Thompson MP. * Updated .gitmodules. * Updated physics. New interstitials. * Synced with NCAR/master * Updated ccpp-physics * Updated physics submodule. * Cleanup * Update physics * Updated physics submodule pointer. * Updated physics submodule hash. * Minor bug fixes to CCPP UGWP (update submodule pointer for ccpp-physics) (NOAA-EMC#216) Update the submodule pointer for ccpp-physics for minor bugfixes in CCPP's Unified Gravity Wave Drag parameterization. * Remove IPD (step 1) (NOAA-EMC#215) Remove all IPD source files that are not needed to compile with CCPP. Update gfsphysics/CMakeLists.txt and gfsphysics/GFS_layer/GFS_driver.F90 so that the code compiles after removing IPD sources. Also: update submodule pointer for GFDL_atmos_cubed_sphere to include PR NOAA-EMC/GFDL_atmos_cubed_sphere#48 ("Removed use of mpp_node for use with FMS 2020.04"). * Update submodule pointers for ccpp-framework (ccpp_prebuild bugfix) and ccpp-physics (RRTMGP GFDL-MP bugfix) (NOAA-EMC#218) Update the submodule pointers for ccpp-framework and ccpp-physics for the changes described in NCAR/ccpp-framework#343 and NCAR/ccpp-physics#536. * Remove unnecessary SIMD instruction sets from ccpp/CMakeLists.txt (NOAA-EMC#220) * Remove additional/unnecessary SIMD instruction sets from ccpp/CMakeLists.txt * Implementation of CCPP timestep_init and timestep_final phases (NOAA-EMC#217) - replace calls to CCPP step `time_vary` with `timestep_init` in `atmos_model.F90`, add call to CCPP step `timestep_final` - update `ccpp/driver/CCPP_driver.F90` with calls to CCPP `timestep_init` and `timestep_final` - add `h2o_def.f` and `ozne_def.` to `ccpp_prebuild_config.py` - update of `gfsphysics/GFS_layer/GFS_typedefs.F90`: cleanup work for o3 and h2o physics (required by the updates to the CCPP time vary physics) - update metadata in `gfsphysics/GFS_layer/GFS_typedefs.meta` for the above changes, and clean up the index used for the surface wind enhancement due to convection in the `phy_f2d` array (use proper index, not just the last entry in the array) * add radiation_clouds_thompson_dependency in ccpp physics (NOAA-EMC#225) * using radiation_clouds_thompson_dependency ccpp physics branch * point to ccpp master branch * Remove IPD steps 3 and 5 (NOAA-EMC#224) * Implementation of CCPP timestep_init and timestep_final phases in fv3atm; cleanup work in GFS_typedefs for o3 and h2o physics as a result of the changes to the time vary physics in CCPP * Use proper index variable for surface wind enhancement due to convection in phy_f2d array in GFS_typedefs.{F90,meta}, move code to clear diagnostic buckets using GFS DDT bound procedures from atmos_model.F90 to CCPP_driver.F90 * First step of cleanup process: remove CCPP preprocessor directives, remove parts of unused IPD code, update cmake build system, Delete IPD source code, Replace IPD DDTs with GFS DDTs, Bugfix in atmos_model.F90; add missing call to GFS_externaldiag_populate, Move contents of gfsphysics/{CCPP_layer,GFS_layer} to ccpp/{data,driver}, entirely deleted IPD typedefs, Rename module GFS_driver to GFS_init * Fix indentation in ccpp/data/CMakeLists.txt and ccpp/driver/CMakeLists.txt * Add logic to set DYN32 depending on 32BIT setting * Pass preprocessor directive GFS_TYPES to dycore to enable use of GFS data types * Compile GFS_diagnostics.F90 without optimization, this leads to out of memory errors on wcoss_dell_p3 * Add CCPP rrtmgp fix (NOAA-EMC#237) * ccpp physics merged with top of master * point back to ccpp master branch * Update develop from NOAA-GSL: RUC ice, MYNN sfclay, stochastic land perturbations (NOAA-EMC#239) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-GSL#54 and NOAA-GSL#56) (NOAA-GSL#60) Implementation of RUC LSM ice model in CCPP * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update gsl/develop from develop 2020/12/08 (NOAA-GSL#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-GSL#63) * Land stochastic perturbations (wrapper PR for NOAA-GSL#65) (NOAA-GSL#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated * Update .gitmodules and submodule pointer for GFDL_atmos_cubed_sphere for code review and testing * Revert change to .gitmodules for ccpp-physics, update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for GFDL_atmos_cubed_sphere Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> * Dycore change to add an option to zero-gradient BC for height advection and change dz_min as a namelist input (NOAA-EMC#232) * Point dycore to a personal branch * Point to new version of dycore * Update the dycore version * Update the dycore version * Point to NOAA-EMC dev/emc dycore branch * Remove gnumake build remnants, change v16beta to v16 (NOAA-EMC#234) * Remove gnumake files * Replace v16beta with v16 for all CCPP suites * Remove unused CCPP_INCLUDE_DIRS/CCPP_LIB_DIRS from ccpp/CMakeLists.txt * Move LSM vegetation lookup tables into CCPP, clean up RUC snow cover on ice initialization (remove IPD step 2) (NOAA-EMC#244) * Move LSM vegetation lookup tables into CCPP, clean up RUC snow cover on ice initialization * Revert change to .gitmodules and update submodule pointer for ccpp-physics * UGWP v0 v1 combined (NOAA-EMC#241) * .gitmodules/gsl atmos-cubed cccp-fram cccp/physics * update fv3atm from NOAA-EMC Jan 9 * new suite_FV3_GFS_v16b_ugwpv1.xml and modifications Jan 11/2021 * Added new logical flag do_ugwp_v0_nst_only which allows non-stationary drag from ugwp_v0 to be run with GSL drag suite * Fix formatting in ccpp/data/GFS_typedefs.* * Clean up allocation of arrays in ccpp/data/GFS_typedefs.F90, add active attribute (pass 1) to ccpp/data/GFS_typedefs.meta, strip trailing whitespaces from both * Update and cleanup of metadata for UGWPv0, UGWPv1, drag suite * Reorganize UGWP diagnostic variables in data/GFS_typedefs.{F90,meta} * Bugfix for uninitialized data in ccpp/data/GFS_typedefs.F90 * Update submodule pointer for ccpp-physics * Allocate 3d diagnostic arrays as dummy arrays if not used Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> * SDF for GFSv16 with Thompson (NOAA-EMC#238) * SDF for GFSv16 with Thompson * Delete suite_FV3_GFS_v16beta_thompson.xml * update to new commit of Thompson MP in ccpp physics Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> Co-authored-by: dustinswales <dustin.swales@noaa.gov> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: XiaSun-NOAA <58949533+XiaSun-NOAA@users.noreply.github.com> * Remove inconsistencies in computation of air density with Thompson MP (NOAA-EMC#74) * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update thompson mp 20210213 (NOAA-EMC#567) for gsl/develop (NOAA-EMC#75) * Add logical convert_dry_rho for Thompson MP, hardcoded to false * Initialize all variables to NaN in ccpp-physics in DEBUG mode * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-framework and ccpp-physics * &gfs_physics_nml print_diff_pgr=.true. will print per-timestep pgr change stats * point to sam's repository for atmos_cubed_sphere * Add units and lat/lon to per-timestep pgr stats * Rebase atmos_cubed_sphere to NOAA-GFDL dev/emc branch * Print mean pgr change as hPa/hr and other pgr data as bars. * Remove changes from atmos_cubed_sphere and simplify atmos_model.F90 changes. * print mean abs change instead of mean change in pgr * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * clarify one print * More 3D diagnostic tendencies (NOAA-EMC#76) Add diagnostic tendencies for all tracers. Move all d*3dt variables into a 4D sparse array stored as `dtend(i,k,dtidx(tracer,process))` to reduce memory usage. * Fix incorrect units in dtend metadata (NOAA-EMC#82) * Fix incorrect units in dtend metadata * Make the tracer tendency units mandatory. * Add SO2 tendency units (NOAA-EMC#86) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-framework and ccpp-physics * dtend: add missing tendencies and fix bugs in convection tendencies (NOAA-EMC#92) * Fix incorrect units in dtend metadata * Point to corresponding ccpp/physics branch * fixes to dtend support: 1. Store rtg (AKA clw AKA qtr) instead of gq0 in DCNV and SCNV pre/post for schemes that use convective transport. Tracers handled solely by convective transport (ones not in rtg) are reported as convective transport tendencies. Tendencies for variables in rtg are reported as dcnv and scnv tendencies. 2. Report TKE tendencies from gfs v16 PBL. 3. Add diagnostic tendencies to drag_suite 4. Only report rayleigh damping tendencies if rayleigh damping is enabled 5. List all possible diagnostic tendencies, even if they are not enabled. In the output, label them "selected" or "disabled." 6. Add phys_tend to the fv3_rap suite. * Merge gsl/develop into ccpp/physics * Add phys_tend to suite_FV3_GSD_SAR and remove some debug prints * Remove some debug prints and commented-out code. * Correct error in dtend variable availability list print. * Enable convtrans diagnostic tendencies for number concentrations and qrimef. * Disable cnvtrans diagnostic tendencies for schemes that do their own diagnostic tendency reporting. * Point to gsl repositories * Update .gitmodules for code review and regression testing * Formatting changes in ccpp/data/GFS_typedefs.F90 * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Point update_gsl_develop_from_develop_20210531 to NOAA-GSL branches of ccpp/physics and ccpp/framework * GF aerosols updates and tunings * GF aerosol updates and tunings from physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Make aod_gf and cactiv_m work appriopriately for restarts Minor code cleanup * Add missing metadata for new GF arrays * Bug fix in ccpp/driver/GFS_restart.F90 for GF * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Add missing active attribute for aod_gf in ccpp/data/GFS_typedefs.meta * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physocs * Change name of sfc_name2(39) from 'weasd' to 'weasdl' in io/FV3GFS_io.F90 * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Changed dimensions of variables tsnow_land and sncovr_ice from horizontal_dimension to horizontal_loop_extent * Added Flake to two suites: FV3_GSD_v0 and FV3_HRRR. * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update to ccpp/data/GFS_typedefs.meta following CCPP standard names update * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointers for ccpp-physics and ccpp-framework * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * Turn on GF aerosol-awareness Tune clwdet (cloud water detrainment) Make evfact (evaporation factor) and radiation factor scale-aware * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for code review and testing * Switch back to NCAR ccpp-framework main, abandon NOAA-GSL fork * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp/physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review aand testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert .gitmodules and update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert .gitmodules and update submodule pointer for ccpp-physics * Update CCPP metadata and several suite defiition files for new GSL regression tests * Bug fix for compiling with Intel on macOS, remove clutter from stdout in io/FV3GFS_io.F90 * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Rename GSL suites to RAP suites, add new RAP suites * rename suite FV3_GSD_v0 to FV3_RAP_noah_sfcdiff_cires_ugwp, delete suite FV3_SAR * Update submodule pointer for ccpp-physics * Address reviewer comments * Update submodule pointer for ccpp-physics * Revert .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> Co-authored-by: tanyasmirnova <38667904+tanyasmirnova@users.noreply.github.com> Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> Co-authored-by: dustinswales <dustin.swales@noaa.gov> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: XiaSun-NOAA <58949533+XiaSun-NOAA@users.noreply.github.com> Co-authored-by: samuel.trahan <Samuel.Trahan@noaa.gov> Co-authored-by: Samuel Trahan (NOAA contractor) <39415369+SamuelTrahanNOAA@users.noreply.github.com> Co-authored-by: hannah barnes <hannah.barnes@noaa.gov> Co-authored-by: Hannah C Barnes <38660891+hannahcbarnes@users.noreply.github.com>

KateFriedman-NOAA added feature New feature or request production update Processing update in production labels Apr 22, 2020

KateFriedman-NOAA self-assigned this Apr 22, 2020

KateFriedman-NOAA added a commit that referenced this issue Apr 28, 2020

Issue #63 - backing out changes meant to go in with v15.3 changes

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KateFriedman-NOAA added a commit that referenced this issue Apr 28, 2020

Issue #63 - bug fix in syndat_qctropcy.fd/qctropcy.f and update to li…

6ed1325

…nk_fv3gfs.sh to point to fix_nco_gfsv15 set that includes fix to storm names in syndat_stmnames

KateFriedman-NOAA added a commit that referenced this issue Apr 28, 2020

Issue #63 - update ProdGSI and EMC_post_gtg tags to match current ops…

b53992a

… versions

RussTreadon-NOAA added a commit that referenced this issue May 1, 2020

Issue #63: update ProdGSI tag to gfsda.v15.3.0

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RussTreadon-NOAA mentioned this issue May 2, 2020

Changes for GFSv15.3 #37

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KateFriedman-NOAA added a commit that referenced this issue May 4, 2020

Issue #63 - updated NCO mode LINK in link_fv3gfs.sh from cp to rsync

43d60c7

KateFriedman-NOAA added a commit that referenced this issue May 4, 2020

Issue #63 - backing out link script change for rsync and using cp again

1d15c72

KateFriedman-NOAA added a commit that referenced this issue May 5, 2020

Issue #63 - updating EMC_gfs_wafs tag to gfs_wafs.v5.0.11

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KateFriedman-NOAA added a commit that referenced this issue May 5, 2020

Issue #63 - updating EMC_gfs_wafs clone path to point to GitHub auth …

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…repo

KateFriedman-NOAA added a commit that referenced this issue May 6, 2020

Issue #63 - fix to qctropcy.f for compile errors

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KateFriedman-NOAA changed the title ~~GFSv15.2.13 production updates and FIX_DIR versioning~~ GFSv15.3.0 production updates May 6, 2020

KateFriedman-NOAA added a commit that referenced this issue May 27, 2020

Issue #63 - final NCO changes ahead of v15.3.0 implementation on May …

737cfa8

…26th at 13Z

KateFriedman-NOAA added a commit that referenced this issue Jun 2, 2020

Issue #63 - adjustments to use correct obsproc

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KateFriedman-NOAA linked a pull request Jun 2, 2020 that will close this issue

GFSv15.3.0 #79

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TerrenceMcGuinness-NOAA added a commit that referenced this issue Jun 8, 2023

Merge pull request #63 from TerrenceMcGuinness-NOAA/feature_1643_badges

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Update hera.yaml

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GFSv15.3.0 production updates #63

GFSv15.3.0 production updates #63

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GFSv15.3.0 production updates #63

GFSv15.3.0 production updates #63

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