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Machine learning tools for the analysis of systems serology data

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systemsseRology

About

systemsseRology is a collection of functions used to analyse multivariate systems serology data. You can learn more about the workflow by looking at vignette("example_analysis").

Installation

systemsseRology requires the ropls package:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ropls")

It can then be installed via devtools:

install.packages("devtools")
devtools::install_github("yixiangD/systemsseRology", ref = "main")
# you may be asked to enable force flag if you have already installed systemsseRology, then use the following line instead
# devtools::install_github("yixiangD/systemsseRology", ref = "main", force = TRUE)
library(systemsseRology)

New features (starting from 2023)

  • Linear model
  • Compute correlation
  • Visualize correlation as a chord diagram

Selected Papers

systemsseRology has been employed in a number of papers, including:

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Machine learning tools for the analysis of systems serology data

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