The code associated with the article:
Natalie Schaworonkow, Jochen Triesch: Ongoing brain rhythms shape I-wave properties in a computational model. Brain Stimulation, 2018. https://doi.org/10.1016/j.brs.2018.03.010
The code was tested with Python 2.7 and NEURON 7.3. Parallel execution of simulations is implemented via mpi4py.
Clone the repository:
git clone git@github.com:trieschlab/tms_model.git
Compile the NEURON mechanisms:
cd tms_model/code
nrnivmodl mechanisms/
Test if the code works:
python run_rusu.py -p params/rusu.py
This should generate an example plot in the working directory. The simulation including ongoing oscillations can be run with:
python run_mu_rhythm.py -p params/high_power.py
(For the high oscillation power condition.) All simulations are independent and can be run as separate cluster jobs.
In case of questions, contact: schaworonkow@fias.uni-frankfurt.de