v1.1.5

• Change license to GPL v3.0

v1.1.4

• Updated Loss function for short genomes (Loss is multiplied by 1/coverage^2).
• Added error messages for ambiguous bases (non 'A', 'T', 'C', 'G' bases).
• Fixed compatibility issues with Biopython (Bio.Blast.Applications.NcbiblastnCommandline have been deprecated).

v1.1.3

• Improved backward compatibility

v1.1.2

• Sanity check for input reference genome and variant list, with error messages for ambiguous bases and invalid values.
• Additional output file in ARTIC/PrimalScheme format.
• Bug fixed: when multiple variants with the same genome position is provided, the sum of frequencies of each variant should be calculated first, then the square root.
• Amplicon name is now the same as user provided title.