Python tool for relative mutation rate of different genes across viral strains.
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Updated
May 11, 2024 - Python
Python tool for relative mutation rate of different genes across viral strains.
Repository for analyses of HHV-6 reactivation using genomics
A bioinformatics tool for designing primers and generating consensus sequences in viral genome analysis. It supports processing multiple aligned genomic sequences, optimizing primers, and visualizing genome annotations.
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
Data portal and API for Center for Viral Systems Biology (CViSB) data
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
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Viral genome assemble and characterisation
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
VIral GEnome ASsembly pipelines for WGS
Human RNA virus genotyping
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.
Viral genome assembly pipeline for WGS using ONT
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