Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
Sep 9, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
fast, multithreaded sourmash operations: search, compare, and gather.
Searching large collections of sequencing data with genome-scale queries
A web component that let you select FastA or FastQ sequence files and creates sketches (KmerMinHash signatures) using Sourmash.
A database for signatures of public genomic sources
Project template for sourmash-based characterization of genomes and metagenomes
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.
Remove contaminated contigs from genomes using k-mers and taxonomies.
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Benchmarking etc code for https://dib-lab.github.io/2022-paper-branchwater-software/
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