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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 463 78

  2. branchwater branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    HTML 7 2

  3. wort wort Public

    A database for signatures of public genomic sources

    Python 17 2

  4. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 15 2

  5. database-examples database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 33 repositories
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    sourmash-bio/sourmash’s past year of commit activity
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    sourmash-bio/sourmash_plugin_branchwater’s past year of commit activity
    Python 15 AGPL-3.0 2 73 16 Updated Aug 24, 2024
  • branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    sourmash-bio/branchwater’s past year of commit activity
    HTML 7 2 22 1 Updated Aug 24, 2024
  • sourmash-bio/sourmash_plugin_directsketch’s past year of commit activity
    Python 1 BSD-3-Clause 1 9 7 Updated Aug 19, 2024
  • database-releases Public

    Build infrastructure for official sourmash database releases

    sourmash-bio/database-releases’s past year of commit activity
    Python 1 BSD-3-Clause 1 2 3 Updated Aug 14, 2024
  • sourmash_plugin_venn Public archive

    venn diagrams for sourmash sketches! (DEPRECATED)

    sourmash-bio/sourmash_plugin_venn’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Aug 11, 2024
  • wort Public

    A database for signatures of public genomic sources

    sourmash-bio/wort’s past year of commit activity
    Python 17 2 22 5 Updated Aug 1, 2024
  • sourmash_plugin_containment_search Public

    An improved `search --containment` for sourmash

    sourmash-bio/sourmash_plugin_containment_search’s past year of commit activity
    Python 2 BSD-3-Clause 0 6 0 Updated Jul 30, 2024
  • sourmash_plugin_betterplot Public

    Improved plotting/viz and cluster examination for sourmash

    sourmash-bio/sourmash_plugin_betterplot’s past year of commit activity
    Python 1 BSD-3-Clause 0 17 0 Updated Jul 22, 2024
  • 2024-benchmark-gather Public

    Benchmarking code for various gather implementations

    sourmash-bio/2024-benchmark-gather’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 30, 2024

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