Galaxy Tool Shed repositories maintained and developed by the Morin Lab.
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Updated
Oct 10, 2017 - Python
Galaxy Tool Shed repositories maintained and developed by the Morin Lab.
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
AI-based prediction of driver mutations
Explore and filter structural variant calls from Lumpy and Delly VCF files
R Shiny based lightweight mutation exploration tool
📦 An R package for inferring the mutational exposures difference between groups.
knowledge-based genotyping of cancer hotspots from the tumor BAM files
Multi-sample somatic variant caller
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Microassembly based somatic variant caller for NGS data
This repo contains an R package to execute ROKET's real data analysis workflow on TCGA cancer types
This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.
Transposon Insertion Finder - Detection of new TE insertions in NGS data
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
Clone identification from single-cell data
Personalized reference editor for somatic mutation discovery
Snakemake workflow for somatic mutation detection without matched normal samples
DNA sequencing analysis notes from Ming Tang
Depository for Bioinformatics Master Project HT2022-VT2023
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