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getzlab

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  1. rnaseqc rnaseqc Public

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C++ 145 19

  2. SignatureAnalyzer SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    Python 71 20

  3. deTiN deTiN Public

    DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

    Jupyter Notebook 49 21

  4. MutSig2CV MutSig2CV Public

    MutSig2CV from Lawrence et al. 2014

    MATLAB 29 7

  5. dalmatian dalmatian Public

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 18 13

  6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

    Jupyter Notebook 14 1

Repositories

Showing 10 of 71 repositories
  • getzlab.github.io Public Forked from drummondlab/drummondlab.github.io

    Getz Lab site

    getzlab/getzlab.github.io’s past year of commit activity
    HTML 4 53 0 0 Updated Aug 19, 2024
  • parsons_her2_tki_manuscript Public

    Code accompanying the Parsons HER2-amplified breast cancer/TKI manuscript

    getzlab/parsons_her2_tki_manuscript’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 16, 2024
  • walker Public

    C++ functions for walking HTS data

    getzlab/walker’s past year of commit activity
    C++ 0 1 0 0 Updated Aug 14, 2024
  • canine Public

    A modular, high-performance computing solution to run jobs using SLURM

    getzlab/canine’s past year of commit activity
    Python 6 BSD-3-Clause 6 14 4 Updated Aug 5, 2024
  • AnnoMate Public

    Review anything (purities, mutations, etc) within a jupyter notebook with plotly dash and jupyter widgets

    getzlab/AnnoMate’s past year of commit activity
    Python 5 MIT 1 1 0 Updated Aug 5, 2024
  • cnv_suite Public Forked from ConorMesser/cnv_suite

    Compare, Visualize, and Simulate Copy Number Profiles

    getzlab/cnv_suite’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 4 0 2 Updated Aug 4, 2024
  • AnnoMateTemplate Public

    Template Repo for generating new JupyterReviewer Suites

    getzlab/AnnoMateTemplate’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 31, 2024
  • PhylogicNDTReviewer Public

    Interactive app to review Phylogic solutions and data.

    getzlab/PhylogicNDTReviewer’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Jul 31, 2024
  • CancerPatientReviewer Public

    Explore integrated data on the patient level interactively in a Dash App, powered by JupyterReviewer

    getzlab/CancerPatientReviewer’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Jul 31, 2024
  • MutationReviewer Public
    getzlab/MutationReviewer’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 31, 2024
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