The ENCODE-DCC demo workflow in Snakemake (under development)
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Updated
Sep 1, 2019 - HTML
The ENCODE-DCC demo workflow in Snakemake (under development)
Ribofilio is a python tool to estimate ribosomes drop off rate.
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
imputation workflow for array data using shapeit2 and impute2
Imputation workflow for low coverage whole genome sequencing data
A snakemake based workflow for ChIPSeq data analysis
multiple imputation for association studies
The evaluation of MERFISHtools and the underyling model as published in the corresponding article.
Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
Origin mechanisms of SAARs – use case of L-SAARs in signal peptides among higher Eukaryotes
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
Snakemake workflow for preprocessing fast files
🙋 My github profile
Snakemake workflow for Salmon quantification and FastQC quality controls
Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
Management of References for Yourself
Python data analysis pipeline for single cell copy number event history reconstruction
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