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@ohmeta

ohmeta

A pipeline catalogue for robust microbiome research.

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  1. metapi metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    Python 55 17

  2. quantpi quantpi Public

    Microbiome profiling

    Python 16 2

  3. qiimepi qiimepi Public

    Snakemake version of QIIME2

    Python 1

  4. mpsepi mpsepi Public

    Microbiota Process and Visualization pipeline based on the MicrobiotaProcess R Package

    Python 1

  5. strainpi strainpi Public

    A pipeline for identify strains from metagenomics data

    Python 1

Repositories

Showing 10 of 52 repositories
  • quantpi Public

    Microbiome profiling

    ohmeta/quantpi’s past year of commit activity
    Python 16 GPL-3.0 2 0 0 Updated Jul 5, 2024
  • simpi Public

    Simulate metagenomics sequencing data for complex microbiome community of bacteriome, archaeome, virome, mycobiome, mobilome and resistome.

    ohmeta/simpi’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 28, 2024
  • metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    ohmeta/metapi’s past year of commit activity
    Python 55 GPL-3.0 17 2 0 Updated May 7, 2024
  • qiimepi Public

    Snakemake version of QIIME2

    ohmeta/qiimepi’s past year of commit activity
    Python 1 0 0 0 Updated Apr 5, 2024
  • strainpi Public

    A pipeline for identify strains from metagenomics data

    ohmeta/strainpi’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 21, 2024
  • rnapi Public

    RNA seq analysis pipeline

    ohmeta/rnapi’s past year of commit activity
    Python 3 1 0 0 Updated Mar 12, 2024
  • awesome-microbiome-datasets Public

    AMD: research power CPU

    ohmeta/awesome-microbiome-datasets’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 5, 2024
  • gtdb-rev Public
    ohmeta/gtdb-rev’s past year of commit activity
    0 0 0 0 Updated Oct 12, 2023
  • callpi Public

    Calling SNP, SNV, CNV, and other genotyping information from metagenomics sequencing data

    ohmeta/callpi’s past year of commit activity
    Python 0 0 0 0 Updated Aug 11, 2023
  • mpsepi Public

    Microbiota Process and Visualization pipeline based on the MicrobiotaProcess R Package

    ohmeta/mpsepi’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 23, 2023
View all repositories

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