STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
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Updated
Dec 15, 2022 - Python
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
A snakemake based workflow for ChIPSeq data analysis
Snakemake workflow for preprocessing fast files
multiple imputation for association studies
Trimming and QC on NGS data
Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
Snakemake based workflow for analysis of dnaseq data for calling germline/somatic mutations
The evaluation of MERFISHtools and the underyling model as published in the corresponding article.
Snakemake workflow for processing small RNA-seq libaries
A minimal Snakemake pipeline.
A Snakemake workflow for RNA-seq analysis
A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
Detect replication slippage variants at microsatellite regions
Snakemake workflow for Salmon quantification and FastQC quality controls
Management of References for Yourself
Make energy model workflows easy as 🥧!
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