Trainable PyTorch framework for developing protein, RNA and complex models.
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Updated
Jan 20, 2024 - Python
Trainable PyTorch framework for developing protein, RNA and complex models.
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
gRNAde: Geometric Deep Learning for 3D RNA inverse design
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
Analyse Nucleic Acids Structure and Simulations with baRNAba
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
A platform to do RNA science
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
TISIGNER: Unleash the power of synthetic biology
Script to facilitate the making of horizontal scripts
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
Software for predicting translation initiation rates in bacteria
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
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