Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
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Updated
Aug 10, 2022 - Python
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Accurate estimation and robust modelling of translation dynamics at codon resolution
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
A comprehensive pipeline for Ribo-seq data analysis
Riborex: Fast and flexible identification of differential translation from Ribo-seq data
Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
Snakemake pipeline for Ribo-Seq analysis
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
CircAidMe is a tool designed to analyze data generated with CircAID-p-seq (immaginabiotech.com/product/circaid-p-seq/). CircAidMe was designed and implemented by Genexa (genexa.ch) in collaboration with Immagina Biotechnology.
Repository for my internship at the University College Cork in 2023.
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