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27 public repositories
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Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
Updated
Nov 12, 2018
Python
QTL mapping with binmap data
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Pipeline for polymap and QTL Mapping
Repository for genomic webapplications served from GitHub pages
Updated
Nov 11, 2020
JavaScript
QTL Bayesian Interval Mapping
Analyses of my MSc Thesis: "Genetic architecture of parasitoid counteradaptation to symbiont-conferred resistance"
To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker analysis to interval mapping.
Analysis code for AIL B6xBFMI
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
Convert HapMap file into a useable R qtl2 genotype file
Updated
Aug 16, 2022
Python
MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets
Project for my module Big Data Biology.
Scripts of Final Master Project
To map Drosophila melanogaster gene region(s) containing resistance to infection by parasitic wasp Leptopilina boulardi.
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
Updated
Mar 18, 2024
Jupyter Notebook
R package for random-effect multiple QTL mapping in autopolyploids
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