PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
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Updated
Aug 14, 2024 - Python
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
Tracking the spread of Foot-and-Mouth Disease virus in South America
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
Example for BEAST v2.5 paper
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
Plague Global Phylogeny Manuscript
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
my second year poster for the Graduate School Poster Day 2016
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