ncbi-taxonomy
Here are 19 public repositories matching this topic...
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Nov 21, 2023 - Python
🐣 locally query the ncbi taxonomy
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Dec 8, 2022 - Python
Assign taxonomy with blast, can be used for qiime
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Aug 18, 2023 - Python
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
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Feb 27, 2023 - Python
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
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May 10, 2024 - Python
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
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Sep 21, 2024 - Python
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
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Jul 17, 2024 - Python
Download genomes from NCBI GenBank FTP site
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Oct 25, 2023 - Python
muddy_mine - mining pipeline
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Nov 27, 2021 - Python
Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
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Oct 30, 2022 - Python
create RDP classifier training files from NCBI taxonomy gbff file
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Aug 15, 2018 - Python
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Apr 15, 2017 - Python
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
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Jun 25, 2024 - Python
Ribosomal RNA Allele Tree
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Mar 30, 2018 - Python
Compare which reptile species are available in NCBI's Taxonomy Browser to those in the Reptile Database (RDB).
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Jul 31, 2021 - Python
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