FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
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Updated
Nov 11, 2023 - Python
FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
Tutorial materials as referenced in IDM's documentation for EMOD, an agent-based disease dynamics model.
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Modeling the HIV, AIDS virus based off of the SIR model. Differential equations and attempt at time delays
(P.I. Max Essex) Botswana Combination Prevention Project
Functions and scripts used in a pipeline to find novel drug resistance associated mutations in HIV pol-RT
Retrospective HIV Cohort for Diabetes Research - Tanzania
News Article classification from raw unlabeled scraped data
Methods for extracting information from jpHMM (http://jphmm.gobics.de) output.
HIV mdelling project on intersections of risk (FSW) & intervention (ART) heterogeneity based on Eswatini
Mobile Health (mHealth) Viral Diagnostics Enabled with Adaptive Adversarial Learning.
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