This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
-
Updated
May 18, 2022 - R
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
tips and tricks in genome-wide association studies - a tutorial
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
GWAS summary statistics files QC tool
From QC to summary statistics
Make interactive LocusZoom plots from a local GWAS file
GWAS analysis process based on EMMAX software
Tool for genome wide association studies with Bayesian inference and statistical learning
Genetic correlation calculation pipeline via summary statistics for PheWeb
A pipeline for GEM And GWAS Automation
A shinyapp for performing GWAS in rapeseed based on a core collection
RHAPSODY WP3 Pre-Diabetes analysis script
A web service to upload and share GWAS results with LocusZoom.js
We suggest a novel way of defining NCD as a continuous phenotype, and we employ a mixed linear model to account for pronounced population stratification in the South Asian sample, which is more diverse than European samples, for example.
Code repo for research project with Dr. Gissette Soffer and Dr. Badri Vardarajan at Columbia Medical Center
DRAGGER: Drug Repositioning by Analysis of GWAS and Gene Expression in R (maintained version). For publication version, see https://github.com/AEstebanMar/DAGGER-publication
A simple GWAS parser + CLI
A pipeline to predict risk genes, implicated cell types and drugs for repurposing based on known risk genes (derived from GWAS) for complex traits.
Add a description, image, and links to the gwas-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the gwas-pipeline topic, visit your repo's landing page and select "manage topics."