Repository for the GA4GH phenopacket schema
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Updated
Jul 6, 2024 - Java
Repository for the GA4GH phenopacket schema
RETIRED - Clinical phenotyping and ETL system
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
The OMOP Common Data Model(v6) implemented in Django (v3)
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
A software toolkit for the interconversion of standard data models for phenotypic data
How to: create drug codelists for recorded prescriptions
Lecture slides on Electronic Health Record Data Quality
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
Introduction to PERMIT project resources
How to: create SNOMED CT codelists
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