CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
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Updated
Jun 1, 2023 - Python
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
KDD2020 paper; Identifying Sepsis Subphenotypes via Time-Aware Multi-Modal Auto-Encoder
attribute-based access control implementation for EHRs
Built a regression model that predicts the expected days of hospitalization time and an uncertainty range estimation.
COVID-19 EHR data analysis pipeline
Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.
A software toolkit for the interconversion of standard data models for phenotypic data
IPEHR-gateway is a solution to provide benefits of decentralized architecture to common HMS apps using standard APIs. IPEHR gateway is used to encrypt and decrypt passing data, support AQL queries of encrypted data and manage user’s cryptographic keys.
This repo contains demonstration code to illustrate the use of the FIHR standard for healthcare data, developed by the HL7 organisation.
omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
Missing data imputation for longitudinal multi-variable EHR data. Paper in JAMIA.
A deep learning project predicting hyperinflammatory syndrome among COVID-19 patients using EHR data.
Collection of bio-medical and clinical ner models in spacy, stanza, flair with some utility files
Prediction of a readmission for a patient based on the Electronic Health Records (EHR) data. This project was done as part of a timed challenge with a time limit of 3 hours to work on this dataset. So, it is just a preliminary model using XGBoost algorithm with some basic data exploration for data processing.
OpenAPI which maps custom EHRs into FHIR R4 Patient and Observation resources. Other resources were not implemented (yet).
Official implementation of "FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with Contrastive Learning in Multimodal Electronic Health Records" (MLHC 2024)
Official implementation of TACCO (Task-guided Co-clustering).
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