Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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Updated
Aug 22, 2024 - R
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Amplicon sequence processing workflow using QIIME 2 and Snakemake
Code and repository links for Klein & Frühe et al. 2024
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Workflow stages and data for Morando, Magasin et al. 2024
Bioinformatic data analysis scripts and pipelines
Processing NEON soil microbe marker gene sequence data into ASV tables.
The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.
DADA2 pipeline for nitrogenase (nifH) amplicon sequences (Illumina paired-end)
Accurate sample inference from amplicon data with single nucleotide resolution
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
Dadaist2 🟨 Highway to R
Metabarcoding analysis pipeline, using DADA2 and qiime2
Here we discuss strategies and workflows to analyse metagenomics datasets
A pipeline to analyse marine fish amplicon data
Introduction to 16S Amplicon Sequencing Data Analysis using DADA2
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