Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
-
Updated
May 17, 2019 - Python
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Synthego ICE - Inference of CRISPR Editing software
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
Flexible analysis of high-content CRISPR screening
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Python library for genome editing, CRISPR gRNA design and prediction
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Base Editing screens' Activity-Normalized variant effect size estimation
CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).
ancestral reconstruction and likelihood analysis for CRISPR spacer arrays
CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
Web app for CRISPR experiment setup and analysis
CRISPR Guide RNA Designer
Tools for single-cell feature barcoding analysis
Add a description, image, and links to the crispr topic page so that developers can more easily learn about it.
To associate your repository with the crispr topic, visit your repo's landing page and select "manage topics."