Calculating AA frequencies from codon design, and vice versa
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Updated
Oct 18, 2021 - Python
Calculating AA frequencies from codon design, and vice versa
Analysis of codon usage in oncogene families.
Calculate CUB indices and optimize the gene sequence to enhance expression
Codon decoder, taking a input from user, then the program will display the type protein created by the codon
A tool for dynamically calculating the codon usage bias in bacterial genomes and querying of a database for Codon Bias statistical analysis
Taxonomic Identity PREdiction: homework for Machine Learning Course 2021 (MSc Bioinformatics for Computational Genomics)
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
Program in R for calculating RSCU.
It is simple codon optimiser by using codon bias and usage
MATLAB package for codon usage bias and NGS analysis
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.
Comparative analysis pipeline of Population's Codon Usage
A Go package for designing DNA.
Predicting Taxonomic Identity and Genetic Composition of Codon Usage Bias Levels Using Deep Learning Models
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
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