📊 Codon usage tables in code-friendly format + Python bindings
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Updated
May 5, 2022 - Python
📊 Codon usage tables in code-friendly format + Python bindings
A Go package for designing DNA.
A python project for analysis of codon usage for gene or genome analysis
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Python3 implementation of commonly used codon usage statistics
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Simple Python program to perform codon optimization or heterology calculations.
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
A slimmed down fork of CodonW with python bindings
Python package of codon usage bias analysis tools
R Package for Codon Usage Bias Analysis
MATLAB package for codon usage bias and NGS analysis
Comparative analysis pipeline of Population's Codon Usage
Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
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