Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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Updated
Mar 20, 2024 - R
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Copy number calling and variant classification using targeted short read sequencing
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
R package to work with ctDNA sequencing data
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
cell-free ChIP-seq pipeline
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
Hunting for CMV and HHV-6 in cfDNA sequence
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
A code to simulate the events of cell-free protein expression
Structural Variants in cell-free tumor DNA
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