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@OpenOmics

OpenOmics

Open Bioinformatics Research
README.md

Welcome to OpenOmics

GIF

We are a diverse group of Bioinformatics scientists, developers, and data scientists on a mission to push science forward.

We believe in open, reproducible, collaborative scientific research, and the strength of community led efforts. We recognize that together as a group we build strong. OpenOmics serves as a place to connect and engage with other community members, share ideas, and build pipelines & tools that enable the greater scientific community.

If you are a new member, welcome! Before getting started, please take a moment to read through our code of conduct. If you have any questions, please feel free to start a discussion.

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  1. genome-seek genome-seek Public

    Clinical Whole Genome and Exome Sequencing Pipeline

    Python 17 11

  2. RNA-seek RNA-seek Public

    Forked from skchronicles/RNA-seek

    A comprehensive quality-control and quantification RNA-seq pipeline

    Python 4 2

  3. modr modr Public

    An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

    Python 6 1

  4. metavirs metavirs Public

    Viral Metagenomics Assembly and Annotation Pipeline

    Python 4 1

  5. cell-seek cell-seek Public

    One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

    Python 1

  6. chrom-seek chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    Python 4 1

Repositories

Showing 10 of 42 repositories
  • dockerfiles Public

    Dockerfiles for reproducible scientific research and beyond!

    OpenOmics/dockerfiles’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 19, 2024
  • chrom-seek Public

    An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

    OpenOmics/chrom-seek’s past year of commit activity
    Python 4 MIT 1 13 1 Updated Aug 19, 2024
  • project-template Public template

    An awesome, minimal github template for your projects

    OpenOmics/project-template’s past year of commit activity
    R 1 MIT 1 0 0 Updated Aug 15, 2024
  • brakerMake Public

    Snakemake pipeline for annotating with braker and adding functional information

    OpenOmics/brakerMake’s past year of commit activity
    Python 1 0 0 0 Updated Aug 15, 2024
  • metamorph Public

    Metagenomics and Metatranscriptomics pipeline

    OpenOmics/metamorph’s past year of commit activity
    Python 4 MIT 1 3 0 Updated Aug 13, 2024
  • methyl-seek Public

    Bisulphite-sequencing based methylation pipeline

    OpenOmics/methyl-seek’s past year of commit activity
    Python 6 MIT 3 0 1 Updated Aug 13, 2024
  • drep Public Forked from MrOlm/drep

    Rapid comparison and dereplication of genomes

    OpenOmics/drep’s past year of commit activity
    Python 0 36 0 0 Updated Aug 12, 2024
  • scribble Public

    Scripts/code-snippets, somewhere in-between bioinformatics and data science, and oneliners

    OpenOmics/scribble’s past year of commit activity
    Python 4 MIT 3 0 0 Updated Aug 8, 2024
  • cell-seek Public

    One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

    OpenOmics/cell-seek’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 5, 2024
  • parabricks-benchmark Public

    Benchmarking parabricks GPU-accelerated tools for GATK and beyond!

    OpenOmics/parabricks-benchmark’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 11, 2024
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People

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