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  1. tsimpute tsimpute Public

    Genome-wide genotype imputation using tree sequences.

    Jupyter Notebook

  2. tskit tskit Public

    Forked from tskit-dev/tskit

    Population-scale genomics

    Python

  3. lshmm lshmm Public

    Forked from astheeggeggs/lshmm

    code to run Li and Stephens

    Python

  4. sc2ts sc2ts Public

    Forked from jeromekelleher/sc2ts

    Infer a succinct tree sequence from SARS-COV-2 variation data

    Python