R and LoggingLab package

Sylvain Schmitt May 4, 2023

R and LoggingLab package

This container includes:

• R 4.0.3
• LoggingLab (dev)

LoggingLab is an R Package to Simulate Forest Logging.

[https://github.com/VincyaneBadouard/LoggingLab]

Singularity container based on the recipe: Singularity

Package installation using Miniconda3 V4.7.12

Image singularity (V>=3.3) is automatically test and built and pushed on the registry using test.yml & builder.yml

build:

sudo singularity build LoggingLab.sif Singularity

pull:

singularity pull https://github.com/sylvainschmitt/singularity-LoggingLab/releases/download/0.0.1/sylvainschmitt-singularity-template.latest.sif

snakemake:

    singularity: 
        "https://github.com/sylvainschmitt/singularity-LoggingLab/releases/download/0.0.1/sylvainschmitt-singularity-template.latest.sif"

test:

singularity run -e LoggingLab.sif Rscript test.R