GUI implementation for the msqrob2 package for differentially expression analysis in mass spectrometry using the Features infrastructure

The msqrob2 Bioconductor package ports and modernises the method presented in MSqRob and MSqRobSum to use the QFeatures class infrastructure.

The msqrob2gui package implements shiny apps for Bioconductor package msqrob2.

Installation

if(!requireNamespace("BiocManager", quietly = TRUE)) {
 install.packages("BiocManager")
}
BiocManager::install("msqrob2")
BiocManager::install("statomics/msqrob2gui")

Launch app

The app can be launched by loading the package and running the launchMsqrob2App function

library(msqrob2gui)
launchMsqrob2App()

Use App

An instruction video can be found on https://youtu.be/F5d0E-U4rOM