skull-stripper

Segmentation of mouse brain fMRI

Depedencies

• Python 3.6.8
• Torch 1.3.1
• Torchvision 0.4.2
• Tensorboard 1.14.0
• TensorboardX 1.4
• Numpy 1.17.2
• Matplotlib 3.1.1
• Pillow 6.2.1
• scikit-image 0.16.2
• scikit-learn 0.21.3

Citation

@inproceedings{pontes2021deep,
  title={A Deep Learning-Based Tool for Automatic Brain Extraction from Functional Magnetic Resonance Images of Rodents},
  author={Pontes-Filho, Sidney and Dahl, Annelene Gulden and Nichele, Stefano and Mello, Gustavo BM},
  booktitle={Proceedings of SAI Intelligent Systems Conference},
  pages={549--558},
  year={2021},
  organization={Springer}
}