Web application for user registration, uploading .fastq files and introduction of necessary parameters to perform DNA methylation analysis and download of results.
HPG-Methyl is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation context extractor.
You can see the HPG-Methyl project in the following link to its GitHub.
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Create the gradle.properties file and configure the database parameters in it. Use the file gradle.properties.example as an example.
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It is recommended to use Docker for an automatic build. To do this you can launch the Gradle task hpgMethylDeploy. From project root directory you can use task via gradlew:
./gradlew hpgMethylDeploy
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Register the first user through the registration form. You will have to give it the Admin role through the database.
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In the admin panel, review the application settings.
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Copy your generated bs-index files to the configured folder.
The project is temporarily deployed at the following url.