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188 Open 1,832 Closed
188 Open 1,832 Closed
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Issues list

KP.3.1.1 with S:T430I (14 seqs, Canada)
#2020 opened Sep 12, 2024 by NkRMnZr
KP.3.1.1 with S:D80Y on T25207C reversion branch (19 seqs, Canada) DeFLuQE S:S31-+S:F456L+S:Q493E Reversions S:80 S:440 S:500
#2019 opened Sep 12, 2024 by NkRMnZr
JN.1.67.1+S:I794T(16 seqs, Northeastern China) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest S:456 S:794
#2018 opened Sep 12, 2024 by aviczhl2
KS.1.1/KP.3 recombinant (2 seqs, Puerto Rico) FLiRT FLiRT is an Acronym for S:R346T + S:F456L FLuQE S:F456L+S:Q493E recombinant S:22 S:59 S:1104
#2017 opened Sep 12, 2024 by aviczhl2
KP.2.6+S:T385I (12 seqs, 5 countries) DeFLiRT S:S31/F32-+S:R346T+S:F456L S:64 s:385
#2016 opened Sep 12, 2024 by aviczhl2
KP.3.1.1 + S:I101T, S:A376N (2-nuc), ORF1a:K2200R, ORF1a:K3353R, ORF1b:Y113H [2 seq, USA, Denmark] 2nuc mutation DeFLuQE S:S31-+S:F456L+S:Q493E N Glycan S:101 S:376 Usher Issues with usher related problems
#2015 opened Sep 11, 2024 by ryhisner
XDY + S:A435S, S:A1174T, N:R36Q, ORF7a:P34L, ORF9b:D33G (3 with S:T572I) [6 seq, 4 countries] DeFLuQE S:S31-+S:F456L+S:Q493E Rapid review needed S:190 S:435 S:572 S:1174
#2014 opened Sep 11, 2024 by ryhisner
1
KP.1.1.1 subbranch with S:del257-260 on Orf1a:S2488F branch(29 seqs, 4 countries) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. Deletions/Truncations/Frameshifted Lineage showing any deletions or stop codons or TRS changes. KP.1.1.1 S:257
#2013 opened Sep 10, 2024 by Over-There-Is
1
KP.1.1.3 subbranch with S:T>K478R, Orf1a:L1249F, D2026N, Orf1b:S442N and Orf6:L35F(CA-ON 28) DeFLiRT S:S31/F32-+S:R346T+S:F456L KP.1.1 S:478 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#2012 opened Sep 10, 2024 by Over-There-Is
1
KP.2.3 subbranch with Orf9b:P>S10F, Orf1a:Q884E, Q1201K and Orf3a:F105L(CA-ON 18) ORF9b Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#2011 opened Sep 10, 2024 by Over-There-Is
1
LF.7 subbranch with S:K529N and Orf1a:R1225I (NG 2 via US-VA) LF.7 N Glycan S:529 Singlet One only sample.
#2010 opened Sep 10, 2024 by Over-There-Is
1
LB.1 subbranch with S:M731I (32, CA 23, US 9) and further Orf3d:Q22*(CA-ON 22) on Orf1b:R276C, Orf3a:A33S branch LB.1 S:731 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#2009 opened Sep 10, 2024 by Over-There-Is
1
LB.1.3 subbranch with Orf10:Q29*(CA-ON 40) DeFLiRT S:S31/F32-+S:R346T+S:F456L Orf:10 S:183 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#2008 opened Sep 10, 2024 by Over-There-Is
1
MB.1.1 subbranch with S:P809S(6 sequences, IT 5, US 1) FViRT S:F456V+S:R346T MB.1.1 S:22 S:31 s:182 S:809
#2007 opened Sep 10, 2024 by Over-There-Is
KP.2.3 subbranch with S:H1101Y (US 48, 7 states) KP.2.3 S:1101 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#2006 opened Sep 10, 2024 by Over-There-Is
1
LB.1.7.2 subbranch with S:T208M(US 10, 2 states) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. DeFLiRT S:S31/F32-+S:R346T+S:F456L S:183 S:208 S:680
#2005 opened Sep 10, 2024 by Over-There-Is
1
KP.3.1.1 subbranch with S:G946R and Orf1a:K527R, A2821T, I3587V(CA-ON 10) KP.3.1.1 Mutations outside spike S:964
#2004 opened Sep 10, 2024 by Over-There-Is
KP.2.3 subbranch with S:del185-189(13 sequences, 3 countries) DeFLiRT S:S31/F32-+S:R346T+S:F456L Deletions between S:180-190 it is an umbrella that collects lineages with mutations in the S:180-190 area of the NTD KP.2.3 S:146 S:1104
#2003 opened Sep 10, 2024 by Over-There-Is
1
KP.2.3 subbranch with S:del243-244, Orf1a:P2079S and Orf1b:E913D(US-CA 3) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. Deletions/Truncations/Frameshifted Lineage showing any deletions or stop codons or TRS changes. S:243
#2002 opened Sep 10, 2024 by Over-There-Is
1
KP.3.1.1 plus S:R237M and Orf1b:A545T in Chile (5) KP.3.1.1 S:237
#2001 opened Sep 10, 2024 by FedeGueli
XDV.1 + ORF3a:A98T + S:K478I + ORF1a:T891I (18 in Hubei, 1 in Gansu) 8% prevalence in Hubei in late August > growing Rapid review needed S:478 XDV
#1999 opened Sep 10, 2024 by Fearuncle
2
JN.1.51.1+S:G261R(8 seqs, 3 countries) S:261 S:456 Usher Issues with usher related problems
#1998 opened Sep 9, 2024 by aviczhl2
1
XDV.1.7+Orf1a:F3604L+N:T366I+Orf1a:P1207L,S:A1174V (8 seqs, 2 countries) Convergent evolution Lineages with convergent mutations S:1174 XDV
#1997 opened Sep 9, 2024 by aviczhl2
1
LF.7+S:T961M( 3 seqs, 3 countries) FLiRT FLiRT is an Acronym for S:R346T + S:F456L S:22 s:182 S:190 S:444 S:961
#1996 opened Sep 8, 2024 by aviczhl2
KS.1.1(or KS.1+S:T22N)+Orf1a:N470T,D1639N,S:R190S(6 seqs, 3 countries) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest FLiRT FLiRT is an Acronym for S:R346T + S:F456L S:22 S:190
#1995 opened Sep 8, 2024 by aviczhl2
3
ProTip! Exclude everything labeled bug with -label:bug.