A curated list of biomedical knowledge graphs and of resources for their construction.
This repository is inspired by awesome lists and follows the style guide of the awesome manifesto.
The goal of this repository is to provide an overview of knowledge graphs in the domain of biomedicine and of resources for their construction. This is achieved in three complementary ways:
- A survey presents a broad overview of academic and commercial projects that provide biomedical knowledge graphs or associated resources.
- A curated list contains an opinionated selection of some of these projects that I find worth highlighting for various reasons.
- A collection of notebooks delivers an in-depth inspection of a handful of projects by performing an exploratory data analysis on their knowledge graphs.
I hope this work serves you well! If you have a suggestion, notice an error, or just want to drop a message, please don't hesitate to contact me. Direct contributions via a pull request are also highly welcome.
A PDF report and accompanying website present a comprehensive overview of available biomedical knowledge graphs and of resources for their construction.
A curated list presents and characterizes a carefully selected subset of the survey's entries in the style of an awesome list.
The following Jupyter notebooks provide detailed inspections of five projects, with previews of their knowledge graph schemata:
