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@ratschlab

Biomedical Informatics at ETH Zurich

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  1. RGAN RGAN Public

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 637 183

  2. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 189 33

  3. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 122 25

  4. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 108 16

  5. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 102 32

  6. dpsom dpsom Public

    Code associated with ACM-CHIL 21 paper 'T-DPSOM - An Interpretable Clustering Method for Unsupervised Learning of Patient Health States'

    Python 66 17

Repositories

Showing 10 of 107 repositories
  • nanotron-petagraph Public Forked from huggingface/nanotron

    Minimalistic large language model 3D-parallelism training - Forked to train Petagraph

    ratschlab/nanotron-petagraph’s past year of commit activity
    Python 0 Apache-2.0 83 0 0 Updated Jun 30, 2024
  • genomic-gnn Public

    Repository for the paper "Learning Genomic Sequence Representations using Graph Neural Networks over De Bruijn Graph"

    ratschlab/genomic-gnn’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Jun 24, 2024
  • sshash Public Forked from jermp/sshash

    A compressed, associative, exact, and weighted dictionary for k-mers.

    ratschlab/sshash’s past year of commit activity
    C++ 0 MIT 15 0 0 Updated Jun 22, 2024
  • RMS Public

    RMS public code

    ratschlab/RMS’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 21, 2024
  • circEWS Public

    circEWS public code

    ratschlab/circEWS’s past year of commit activity
    Python 56 MIT 24 3 0 Updated Jun 21, 2024
  • metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    ratschlab/metagraph’s past year of commit activity
    C++ 108 GPL-3.0 16 8 12 Updated Jun 20, 2024
  • metagraph_paper_resources Public

    This repository contains resources related to the manuscript describing the MetaGraph framework

    ratschlab/metagraph_paper_resources’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 13, 2024
  • ratschlab/medical-reports-deidentification’s past year of commit activity
    Java 0 MIT 2 0 1 Updated Jun 11, 2024
  • aestetik Public

    AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

    ratschlab/aestetik’s past year of commit activity
    Python 8 0 0 0 Updated Jun 7, 2024
  • simulate_spatial_transcriptomics_tool Public

    Simulate spatial transcriptomics data

    ratschlab/simulate_spatial_transcriptomics_tool’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jun 7, 2024

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