Fix #766 #408
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
push: | |
branches: | |
- master | |
- devel | |
pull_request: | |
branches: | |
- master | |
- devel | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
#- {os: windows-latest, r: 'devel', rglusenull: "true"} | |
- {os: windows-latest, r: 'release', rglusenull: "true"} | |
#- {os: windows-latest, r: '3.6', rglusenull: "true"} | |
#- {os: macOS-latest, r: 'release', rglusenull: "true"} | |
- {os: ubuntu-latest, r: 'release'} | |
#- {os: ubuntu-latest, r: 'devel'} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
_R_CHECK_FORCE_SUGGESTS_: false | |
RGL_USE_NULL: ${{ matrix.config.rglusenull }} | |
RSPM: ${{ matrix.config.rspm }} | |
NOT_CRAN: true | |
OMP_NUM_THREADS: 1 | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Brew and macOS config | |
if: runner.os == 'macOS' | |
run: | | |
# conflicts with gfortran from r-lib/actions when linking gcc | |
rm '/usr/local/bin/gfortran' | |
brew install gdal proj geos | |
brew install --cask xquartz | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Cache R packages | |
if: runner.os != 'Windows' | |
uses: actions/cache@v1 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2- | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
run: | | |
sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable | |
sudo apt update | |
sudo apt install \ | |
libgdal-dev \ | |
libgeos++-dev \ | |
libudunits2-dev \ | |
libproj-dev \ | |
libx11-dev \ | |
libgl1-mesa-dev \ | |
libglu1-mesa-dev \ | |
libfreetype6-dev \ | |
libnode-dev \ | |
libxt-dev \ | |
libfftw3-dev | |
- name: Install dependencies | |
run: | | |
install.packages("BiocManager") | |
BiocManager::install("EBImage") | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_cran("rcmdcheck") | |
remotes::install_cran("covr") | |
shell: Rscript {0} | |
- name: Check | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@main | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check | |
- name: Test coverage | |
if: matrix.config.os == 'ubuntu-20.04' && matrix.config.r == 'devel' | |
run: covr::codecov(type = "all") | |
shell: Rscript {0} |