Upkeep 2024-07

[hadley]

No description provided.

[hadley]

I am mystified by the mac failure

[lionel-]

The crash reliably happens in:

test_that("with_device functions create a plot file", { fn_names <- c("with_bmp", "with_jpeg", "with_pdf", "with_png", "with_tiff", "with_svg", "with_cairo_pdf", "with_cairo_ps") fns <- mget(fn_names, envir = asNamespace("withr")) for (i in seq_along(fns)) { skip_if_needs_cairo(fn_names[[i]]) filename <- withr::local_tempfile() expect_no_error(fns[[i]](filename, plot(1))) expect_true(file.exists(filename), info = fn_names[[i]]) expect_gt(file.info(filename)$size, 0, label = fn_names[[i]]) }})

I tried to set _R_TRACE_LOADNAMESPACE_ to "4" to get more information about which library.dynam() call fails. Somehow this prevents the crash from happening. But we get these warnings which do look relevant:

══ Warnings ════════════════════════════════════════════════════════════════════
── Warning ('test-devices.R:17:5'): with_*device* functions create a plot file ──
unable to load shared object '/Library/Frameworks/R.framework/Resources/modules//R_X11.so':
  dlopen(/Library/Frameworks/R.framework/Resources/modules//R_X11.so, 0x0006): Library not loaded: /opt/X11/lib/libSM.6.dylib
  Referenced from: <31EADEB5-0A17-3546-9944-9B3747071FE8> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/modules/R_X11.so
  Reason: tried: '/opt/X11/lib/libSM.6.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/X11/lib/libSM.6.dylib' (no such file), '/opt/X11/lib/libSM.6.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libSM.6.dylib' (no such file), '/Users/runner/hostedtoolcache/Java_Temurin-Hotspot_jdk/21.0.4-7.0/arm64/Contents/Home//lib/server/libSM.6.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libSM.6.dylib' (no such file), '/Users/runner/hostedtoolcache/Java_Temurin-Hotspot_jdk/21.0.4-7.0/arm64/Contents/Home//lib/server/libSM.6.dylib' (no such file), '/Library/Frameworks/R.framework/Resources [... truncated]
Backtrace:
     ▆
  1. ├─testthat::expect_no_error(fns[[i]](filename, plot(1))) at test-devices.R:17:5
  2. │ └─testthat:::expect_no_(...)
  3. │   └─testthat:::quasi_capture(enquo(object), NULL, capture)
  4. │     ├─testthat (local) .capture(...)
  5. │     │ └─rlang::try_fetch(...)
  6. │     │   ├─base::tryCatch(...)
  7. │     │   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  8. │     │   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  9. │     │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 10. │     │   └─base::withCallingHandlers(...)
 11. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 12. └─fns[[i]](filename, plot(1))
 13.   └─withr:::svg_dev(...)
 14.     └─withr:::svg_wrapper(...)
 15.       └─grDevices::svg(...) at withr/R/devices.R:14:3
 16.         └─grDevices:::symbolfamilyDefault(family)
 17.           └─grDevices:::symbolType1support()
 18.             └─grDevices::grSoftVersion()
── Warning ('test-devices.R:17:5'): with_*device* functions create a plot file ──
unable to load shared object '/Library/Frameworks/R.framework/Resources/library/grDevices/libs//cairo.so':
  dlopen(/Library/Frameworks/R.framework/Resources/library/grDevices/libs//cairo.so, 0x0006): Library not loaded: /opt/X11/lib/libXrender.1.dylib
  Referenced from: <63619C6D-FE72-3544-BCEF-9C834A5E39D8> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/grDevices/libs/cairo.so
  Reason: tried: '/opt/X11/lib/libXrender.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/X11/lib/libXrender.1.dylib' (no such file), '/opt/X11/lib/libXrender.1.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libXrender.1.dylib' (no such file), '/Users/runner/hostedtoolcache/Java_Temurin-Hotspot_jdk/21.0.4-7.0/arm64/Contents/Home//lib/server/libXrender.1.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libXrender.1.dylib' (no such file), '/Users/runner/hostedtoolcache/Java_Temurin-Hotspot_jdk/21.0.4-7.0/arm64/Contents/Home//lib/ [... truncated]
Backtrace:
     ▆
  1. ├─testthat::expect_no_error(fns[[i]](filename, plot(1))) at test-devices.R:17:5
  2. │ └─testthat:::expect_no_(...)
  3. │   └─testthat:::quasi_capture(enquo(object), NULL, capture)
  4. │     ├─testthat (local) .capture(...)
  5. │     │ └─rlang::try_fetch(...)
  6. │     │   ├─base::tryCatch(...)
  7. │     │   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  8. │     │   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  9. │     │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 10. │     │   └─base::withCallingHandlers(...)
 11. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 12. └─fns[[i]](filename, plot(1))
 13.   └─withr:::svg_dev(...)
 14.     └─withr:::svg_wrapper(...)
 15.       └─grDevices::svg(...) at withr/R/devices.R:14:3
 16.         └─grDevices:::symbolfamilyDefault(family)
 17.           └─grDevices:::symbolType1support()
 18.             └─grDevices::grSoftVersion()
  9. │     │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 10. │     │   └─base::withCallingHandlers(...)
 11. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 12. └─fns[[i]](filename, plot(1))
 13.   └─withr:::cairo_ps_dev(filename = new, ...)
 14.     └─grDevices::cairo_ps(filename = filename, ...) at withr/R/devices.R:29:3
── Warning ('test-devices.R:33:7'): local_device functions create a plot file ──
failed to load cairo DLL
Backtrace:
     ▆
  1. └─base::eval(...)
  2.   └─base::eval(...)
  3.     ├─testthat::expect_no_error(fns[[i]](filename)) at test-devices.R:33:7
  4.     │ └─testthat:::expect_no_(...)
  5.     │   └─testthat:::quasi_capture(enquo(object), NULL, capture)
  6.     │     ├─testthat (local) .capture(...)
  7.     │     │ └─rlang::try_fetch(...)
  8.     │     │   ├─base::tryCatch(...)
  9.     │     │   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 10.     │     │   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 11.     │     │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 12.     │     │   └─base::withCallingHandlers(...)
 13.     │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 14.     └─fns[[i]](filename)
 15.       └─withr:::svg_dev(...)
 16.         └─withr:::svg_wrapper(...)
 17.           └─grDevices::svg(...) at withr/R/devices.R:14:3
── Warning ('test-devices.R:33:7'): local_device functions create a plot file ──
failed to load cairo DLL
Backtrace:
     ▆
  1. └─base::eval(...)
  2.   └─base::eval(...)
  3.     ├─testthat::expect_no_error(fns[[i]](filename)) at test-devices.R:33:7
  4.     │ └─testthat:::expect_no_(...)
  5.     │   └─testthat:::quasi_capture(enquo(object), NULL, capture)
  6.     │     ├─testthat (local) .capture(...)
  7.     │     │ └─rlang::try_fetch(...)
  8.     │     │   ├─base::tryCatch(...)
  9.     │     │   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 10.     │     │   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 11.     │     │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 12.     │     │   └─base::withCallingHandlers(...)
 13.     │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 14.     └─fns[[i]](filename)
 15.       └─withr:::cairo_pdf_dev(filename = new, ...)
 16.         └─grDevices::cairo_pdf(filename = filename, ...) at withr/R/devices.R:24:3

Have you seen this before @gaborcsardi?

[gaborcsardi]

Keep the XQuartz installation in the GHA workflow file, it is needed on macOS:
https://github.com/r-lib/withr/pull/264/files#diff-9c940e8ad2b7bc4c26ec3da57b94bc00e73e2166cfed689da51a4c59bcc0a310L54

[lionel-]

It worked! Thanks!