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Bug fixes

Bug fixes #141

Workflow file for this run

on: [push, pull_request]
name: R-CMD-check
jobs:
R-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- { os: windows-latest, r: 'release'}
- { os: windows-latest, r: 'devel'}
#- { os: macOS-latest, r: 'oldrel'}
# - { os: macOS-latest, r: 'release'}
#- { os: macOS-latest, r: 'devel'}
#- { os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.rspm }}
RGL_USE_NULL: true
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@v2
- name: Query dependencies
if: runner.os == 'Windows'
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Query dependencies
if: runner.os == 'macOS'
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install pak
if: runner.os == 'macOS'
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
shell: Rscript {0}
- name: Install pak
if: runner.os == 'Windows'
run: |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
shell: Rscript {0}
- name: Install system dependencies (macOS)
if: runner.os == 'macOS'
run: |
brew install pkg-config
brew install gdal
brew install imagemagick@6
- name: Install spatial dependencies
if: runner.os == 'Linux'
run: sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev netcdf-bin libmagick++-dev
- name: Install dependencies
if: runner.os == 'macOS'
run: |
install.packages("Rcpp")
install.packages('terra', repos='https://rspatial.r-universe.dev')
remotes::install_deps(dependencies = TRUE)
remotes::install_cran(c("rcmdcheck", "curl"))
shell: Rscript {0}
- name: Install dependencies
if: runner.os == 'Windows'
run: |
install.packages("Rcpp")
install.packages('terra', repos='https://rspatial.r-universe.dev')
remotes::install_deps(dependencies = TRUE)
remotes::install_cran(c("rcmdcheck", "curl"))
shell: Rscript {0}
- name: Install dependencies
if: runner.os == 'Linux'
run: |
install.packages(c("remotes", "rcmdcheck"))
remotes::install_deps(dependencies = TRUE)
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual","--as-cran"), error_on = "error")
shell: Rscript {0}
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v2
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check