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Merge pull request #136 from qiyunzhu/upgrade
Upgraded to version 0.1.3
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# Change Log | ||
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## Version 0.1.3 (08/27/2021) | ||
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### Changed | ||
- Migrated from Travis CI to GitHub Actions (#127). | ||
- Made `--map-as-rank` default when only mapping file(s) are provided (#132). | ||
- Renamed `--normalize|-z` as `--frac|-f` (#128). | ||
- Modified core algorithm which slightly improved performance (#124). | ||
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### Added | ||
- Added `tool normalize` command, with multiple features (#124). | ||
- Added the feature to collapse a stratified table (#126). | ||
- Created an WoL FTP server, and added link to it (#118). | ||
- Added an WoL standard operating procedure (`wolsop.sh`) and documentation (#116). | ||
- Added first [citation](https://www.biorxiv.org/content/10.1101/2021.04.04.438427v1.abstract) of Woltka (#111). | ||
- Added protocols for Bowtie2 / SHOGUN and Fastp (#121). | ||
- Added discussion about mapping uniqueness (#131). | ||
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### Fixed | ||
- Fixed free-rank classification subject not found issue (#120). | ||
- Corrected paths to example files and directories (#117). | ||
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## Version 0.1.2 (03/31/2021) | ||
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### Changed | ||
- Updated Qiita documentation (#107). | ||
- Renamed "gOTU" with "OGU" (#104). | ||
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### Added | ||
- Published at PyPI. Can be installed by `pip install woltka` (#108). | ||
- Added instructions for using MetaCyc and KEGG (#99, #101). | ||
- Added `tool collapse` command, which supports one-to-many classification (#99). | ||
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### Fixed | ||
- Fixed Handling of zero length alignment (#105). | ||
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## Version 0.1.1 (02/17/2021) | ||
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### Added | ||
- First official release. | ||
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