🔖 0.6.0 #86
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| name: Build and Deploy | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python # Set Python version | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install tabix # need bgzip | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 | |
| python -m pip install poetry | |
| poetry install -v | |
| - name: Run flake8 | |
| run: flake8 vcfstats | |
| - name: Test with pytest | |
| run: poetry run pytest tests/ --junitxml=junit/test-results-${{ matrix.python-version }}.xml | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pytest-results-${{ matrix.python-version }} | |
| path: junit/test-results-${{ matrix.python-version }}.xml | |
| # Use always() to always run this step to publish test results when there are test failures | |
| if: ${{ always() }} | |
| - name: Run codacy-coverage-reporter | |
| uses: codacy/codacy-coverage-reporter-action@master | |
| if: matrix.python-version == 3.9 | |
| with: | |
| project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| coverage-reports: .coverage.xml | |
| deploy: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python # Set Python version | |
| uses: actions/setup-python@v4 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry | |
| - name: Publish to PyPI | |
| run: poetry publish --build -u ${{ secrets.PYPI_USER }} -p ${{ secrets.PYPI_PASSWORD }} | |
| if: success() | |
| docker: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v3 | |
| with: | |
| push: true | |
| tags: justold/vcfstats:latest,justold/vcfstats:${{ github.ref_name }} |