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Issues list

odgi build Assertion '!has_node(id)' failed
#590 opened Sep 4, 2024 by cwatt
validate segfaults if path contains a non-existant node
#587 opened Aug 9, 2024 by ASLeonard
Mistake in GFA links?
#586 opened Aug 8, 2024 by dirkjanvw
Odgi unchop performance for large graphs
#584 opened Jul 16, 2024 by sivico26
3
odgi untangle multiple reference file - potential bug
#581 opened Jul 8, 2024 by Catriona-Miller
3
odgi extract somehow keeps the node which needs to be removed
#577 opened Jun 19, 2024 by yeeus
2
Feature request: Keep path names after 'extract'
#574 opened Jun 3, 2024 by joehagmann
Remove Complex Region of the Graph Pangenome
#572 opened May 7, 2024 by zhangyixing3
5
exporting all possible closed circular path in fasta from a gfa file
#563 opened Mar 13, 2024 by splaisan
1
bed file
#561 opened Feb 28, 2024 by ZiliaMR
3
bring odgi to macos-aarch64 help wanted Extra attention is needed
#553 opened Feb 6, 2024 by subwaystation
Trailing comma on P lines after pruning with odgi prune
#549 opened Jan 18, 2024 by sivico26
5
Sorting graph with -Y option triggers "Assertion `idx < this->size()' failed" error
#548 opened Jan 16, 2024 by sivico26
12
unable to untangle injected graph
#543 opened Jan 4, 2024 by michael-olufemi
3
Failing to inject path into og file while using odgi -inject
#536 opened Oct 26, 2023 by gavinieong
1
Translating path coordinates to flattened pangenome coordinates
#533 opened Sep 28, 2023 by gputzel
1
Defining reference path on graph
#532 opened Sep 28, 2023 by ManuelTgn
3
order of species in odgi viz
#530 opened Sep 18, 2023 by isabelladistefano
1
Does the "odgi sort " truncate the path?
#529 opened Sep 15, 2023 by hui-liu
1
odgi extract - please remove nodes that are not in specified BED range(s)
#526 opened Aug 24, 2023 by subwaystation
9
building odgi with Cactus downloadPangenomeTools results in c++: fatal error: Killed signal terminated program cc1plus
#521 opened Jul 24, 2023 by SomePersonSomeWhereInTheWorld
8
Extending existing graph with long reads
#518 opened Jul 12, 2023 by BaxW
2
odgi extract error
#516 opened Jul 3, 2023 by GeorgeBGM
23
Extending a region with edges!
#515 opened Jun 23, 2023 by coevolutionlab
2
Extracting paths corresponding to a list of nodes
#511 opened Jun 19, 2023 by sdws1983
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